Detailed information NTG0538040

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: LJA36_RS02570
• Genome accession: NZ_CP085282
• Coordinates: 675495..677591 (+)
• Length: 698 a.a.
• NCBI ID: WP_040238219.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain TPS17
• Function: repress competence development (at the early growth phase) (predicted from homology) Competence regulation

Genomic Context

Location: 670495..682591

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJA36_RS02545	queE	670761..671492 (-)	732	WP_003154676.1	7-carboxy-7-deazaguanine synthase QueE	-
LJA36_RS02550	queD	671485..671925 (-)	441	WP_007611020.1	6-carboxytetrahydropterin synthase QueD	-
LJA36_RS02555	queC	671926..672585 (-)	660	WP_003154679.1	7-cyano-7-deazaguanine synthase QueC	-
LJA36_RS02560	-	672837..673958 (-)	1122	WP_015417345.1	hypothetical protein	-
LJA36_RS02565	-	674056..675093 (-)	1038	WP_015417344.1	transporter	-
LJA36_RS02570	clpE	675495..677591 (+)	2097	WP_040238219.1	ATP-dependent protease ATP-binding subunit ClpE	Regulator
LJA36_RS02575	motA	677761..678576 (+)	816	WP_007408461.1	flagellar motor stator protein MotA	-
LJA36_RS02580	motB	678548..679333 (+)	786	WP_003154685.1	flagellar motor protein MotB	-
LJA36_RS02585	-	679370..679816 (-)	447	WP_015417342.1	MarR family transcriptional regulator	-
LJA36_RS02590	-	680015..681532 (+)	1518	WP_046559543.1	ATP-binding protein	-
LJA36_RS02595	-	681742..682002 (-)	261	WP_003154690.1	aspartyl-phosphate phosphatase Spo0E family protein	-

Sequence

Protein

• Length: 698 a.a.
• Molecular weight: 77772.78 Da
• Isoelectric Point: 5.4325

>NTDB_id=538040 LJA36_RS02570 WP_040238219.1 675495..677591(+) (clpE) [Bacillus amyloliquefaciens strain TPS17]
MRCQHCQKNEATIRLNMQVNSIQKQFVLCETCYTELTRKPSMSMGPQSFGFPFEQGFAPNQNKQQAGPEKGLLDELAQNV
TNGAKAGLIDPVIGRDHEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGDVPNKLKNKELYLLDVASLVAN
TGIRGQFEERMKQLMNELKERKNVILFIDEIHLLVGAGSAEGSMDAGNTLKPALARGELQVIGATTLKEYRQIEKDAALE
RRFQPVMVHEPTIEQAISILEGIKDKYEKYHGVTFSNEAINACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLELDTVNE
EDAAERLKAIDAEKTKALHEENYELAAKLRDEEAALEKQLAHETPASSPEIGAEHIQAIIEQKTGIPVGKLQADEQVKMK
ELEEHLHQRVIGQEKAVKKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKTLADELFGTKDSIIRLDMSEYMEK
HAVSKIIGSPPGYVGHDEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVLIMTSNA
GTGEKQVKVGFQSEESVLEEQTLIDSLSAFFKPEFLNRFDSIIEFQSLKKEHLVKIVSLLLTELEDTLKERGISLSVTDE
AKEKIAEIGYHPAFGARPLRRTIQELIEDEMTDLLLDNNEIKAFHVVMEEDGIKVRAQ

Nucleotide

• Length: 2097 bp

>NTDB_id=538040 LJA36_RS02570 WP_040238219.1 675495..677591(+) (clpE) [Bacillus amyloliquefaciens strain TPS17]
ATGCGTTGTCAACATTGTCAGAAAAACGAGGCGACGATTCGCCTGAACATGCAAGTCAATTCCATTCAAAAACAATTCGT
TTTATGCGAAACATGTTATACAGAATTAACCCGAAAACCGTCTATGAGCATGGGGCCGCAATCATTCGGATTCCCGTTTG
AGCAAGGTTTCGCACCCAATCAAAATAAACAGCAGGCCGGCCCTGAAAAAGGCCTGCTCGACGAGCTCGCTCAAAACGTC
ACAAACGGCGCAAAAGCAGGTCTGATTGATCCTGTGATCGGCCGCGATCATGAAGTGGCGCGCGTAATTGAAATTTTGAA
CCGCCGGAATAAAAACAATCCGGTGCTGATCGGTGAACCGGGCGTCGGTAAAACGGCTATTGCAGAAGGCCTCGCGCTTA
AAATCGCTGAAGGCGATGTGCCGAACAAATTGAAAAACAAAGAGCTTTACCTGCTTGACGTCGCTTCTCTCGTCGCCAAT
ACAGGGATCAGAGGCCAGTTTGAAGAAAGAATGAAACAATTAATGAACGAATTAAAAGAACGGAAAAACGTCATCTTGTT
CATTGACGAGATTCACCTTCTTGTAGGCGCCGGCTCTGCCGAGGGATCAATGGATGCCGGGAACACCCTGAAACCGGCGC
TTGCCAGAGGCGAGCTGCAGGTCATCGGGGCGACAACACTGAAAGAGTACCGCCAGATTGAAAAAGATGCGGCGCTTGAA
AGACGCTTCCAGCCTGTCATGGTTCACGAGCCTACAATAGAACAAGCCATCAGCATTCTGGAAGGCATTAAAGATAAATA
TGAGAAATACCACGGCGTCACATTCAGCAATGAAGCGATAAACGCCTGTGTTACGCTTTCATCCCGTTACATTCAGGACC
GCCACCTGCCGGATAAAGCGATCGACTTATTAGATGAAGCCGGCTCTAAGGCGAACCTGGAGCTTGATACCGTAAATGAA
GAAGATGCGGCTGAGAGACTCAAAGCAATTGACGCGGAGAAAACAAAAGCGCTTCATGAAGAAAATTATGAGCTTGCCGC
GAAACTGCGTGATGAAGAAGCGGCGTTGGAAAAGCAGCTGGCGCATGAAACACCGGCCTCTTCACCTGAAATCGGGGCGG
AGCATATTCAAGCCATTATTGAACAGAAAACAGGCATTCCGGTCGGAAAACTCCAGGCTGATGAACAAGTTAAAATGAAG
GAACTTGAAGAGCATCTTCATCAGCGCGTCATCGGTCAAGAAAAAGCCGTGAAAAAAGTGGCGAAAGCGGTCAGACGAAG
CCGCGCCGGCTTAAAATCCAAAAACAGACCTGTCGGCTCCTTCCTCTTTGTCGGACCGACCGGAGTCGGAAAAACCGAGT
TATCAAAGACACTCGCAGATGAACTGTTCGGTACAAAAGATTCCATTATCCGTCTCGATATGAGTGAATACATGGAAAAA
CACGCCGTATCAAAAATCATCGGTTCACCGCCGGGATATGTCGGACACGATGAAGCCGGTCAATTAACGGAAAAAGTGCG
CCGCAATCCGTACAGCATCGTGCTGCTCGATGAGATTGAAAAAGCCCACCCTGATGTCCAGCATATGTTTCTGCAGATTA
TGGAGGACGGCCGTCTGACAGACAGCCAGGGCAGAACGGTCAGCTTCAAAGATACCGTTTTGATTATGACAAGCAACGCT
GGAACCGGCGAAAAACAGGTGAAAGTCGGATTCCAATCTGAAGAGAGCGTCCTGGAAGAACAAACGCTGATTGATTCACT
GAGCGCGTTCTTCAAACCGGAGTTTTTAAACCGGTTTGACAGCATCATTGAATTCCAATCCCTGAAAAAAGAACATCTCG
TGAAAATCGTCAGCCTGCTTCTCACAGAGCTTGAAGACACATTAAAAGAGCGCGGCATCAGCCTGAGCGTAACGGACGAA
GCGAAAGAAAAAATCGCTGAAATCGGCTACCACCCAGCTTTCGGAGCACGCCCGCTCAGAAGAACCATCCAAGAATTGAT
CGAGGACGAAATGACAGATCTCTTATTGGATAACAACGAAATAAAAGCCTTCCATGTCGTAATGGAAGAGGACGGCATCA
AAGTCCGGGCACAATAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (436-602)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (608-679)

• AAA lid domain (AAA_lid_9) (252-351)

• ATPase family associated with various cellular activities (AAA) (AAA) (115-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus mutans UA159	56.735	100	0.597
clpC	Lactococcus lactis subsp. cremoris KW2	56.54	100	0.595
clpE	Streptococcus pneumoniae Rx1	56.131	100	0.59
clpE	Streptococcus pneumoniae R6	56.131	100	0.59
clpE	Streptococcus pneumoniae D39	56.131	100	0.59
clpE	Streptococcus pneumoniae TIGR4	56.131	100	0.59
clpC	Bacillus subtilis subsp. subtilis str. 168	54.075	91.404	0.494
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.154	91.261	0.421
clpC	Streptococcus thermophilus LMD-9	44	93.123	0.41
clpC	Streptococcus pneumoniae Rx1	45.719	88.682	0.405
clpC	Streptococcus pneumoniae D39	45.719	88.682	0.405
clpC	Streptococcus pneumoniae TIGR4	45.719	88.682	0.405
clpC	Streptococcus thermophilus LMG 18311	43.385	93.123	0.404
clpC	Streptococcus mutans UA159	44.137	87.966	0.388