Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   LJA36_RS01870 Genome accession   NZ_CP085282
Coordinates   496935..497384 (-) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 491935..502384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS01840 sepM 492032..493054 (-) 1023 WP_007409697.1 SepM family pheromone-processing serine protease Regulator
  LJA36_RS01845 - 493060..493839 (-) 780 WP_007409696.1 patatin family protein -
  LJA36_RS01850 ylbJ 494019..495245 (+) 1227 WP_040238175.1 sporulation integral membrane protein YlbJ -
  LJA36_RS01855 coaD 495264..495746 (-) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  LJA36_RS01860 rsmD 495751..496305 (-) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LJA36_RS01865 - 496604..496876 (-) 273 WP_003154470.1 YlbG family protein -
  LJA36_RS01870 ylbF 496935..497384 (-) 450 WP_003154472.1 YlbF family regulator Regulator
  LJA36_RS01875 - 497455..497694 (-) 240 WP_003154475.1 YlbE-like family protein -
  LJA36_RS01880 - 497710..498120 (-) 411 WP_007409691.1 YlbD family protein -
  LJA36_RS01885 - 498285..499325 (-) 1041 WP_039251566.1 CAP domain-containing protein -
  LJA36_RS01890 - 499410..499853 (-) 444 WP_017417724.1 CBS domain-containing protein -
  LJA36_RS01895 - 499994..500353 (+) 360 WP_007409688.1 YugN family protein -
  LJA36_RS01900 ctaG 500388..501272 (-) 885 WP_021493723.1 cytochrome c oxidase assembly factor CtaG -
  LJA36_RS01905 ctaF 501297..501629 (-) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  LJA36_RS01910 ctaE 501632..502255 (-) 624 WP_003154482.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=538035 LJA36_RS01870 WP_003154472.1 496935..497384(-) (ylbF) [Bacillus amyloliquefaciens strain TPS17]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=538035 LJA36_RS01870 WP_003154472.1 496935..497384(-) (ylbF) [Bacillus amyloliquefaciens strain TPS17]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGGTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879