Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   LJA36_RS00865 Genome accession   NZ_CP085282
Coordinates   288880..289311 (-) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 283880..294311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS00855 hexA 285376..287961 (-) 2586 WP_040238969.1 DNA mismatch repair protein MutS Machinery gene
  LJA36_RS00860 cotE 288080..288625 (-) 546 WP_003154111.1 outer spore coat protein CotE -
  LJA36_RS00865 ymcA 288880..289311 (-) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  LJA36_RS00870 miaB 289314..290843 (-) 1530 WP_012117585.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LJA36_RS00875 - 290986..292164 (-) 1179 WP_029325912.1 glycine C-acetyltransferase -
  LJA36_RS00880 tdh 292177..293223 (-) 1047 WP_039251466.1 L-threonine 3-dehydrogenase -
  LJA36_RS00885 spoVS 293481..293741 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=538022 LJA36_RS00865 WP_003154113.1 288880..289311(-) (ymcA) [Bacillus amyloliquefaciens strain TPS17]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=538022 LJA36_RS00865 WP_003154113.1 288880..289311(-) (ymcA) [Bacillus amyloliquefaciens strain TPS17]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACTCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAATAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916