Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LJA36_RS00430 Genome accession   NZ_CP085282
Coordinates   145637..147640 (-) Length   667 a.a.
NCBI ID   WP_007611727.1    Uniprot ID   A7Z556
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 140637..152640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS00380 sspO 141070..141216 (+) 147 WP_003153982.1 acid-soluble spore protein SspO -
  LJA36_RS00385 - 141246..141392 (+) 147 WP_003153984.1 small acid-soluble spore protein P -
  LJA36_RS00390 - 141486..141857 (+) 372 WP_007410324.1 Hsp20/alpha crystallin family protein -
  LJA36_RS00395 - 142105..142533 (+) 429 WP_007410325.1 DUF2621 domain-containing protein -
  LJA36_RS00400 - 142561..143052 (-) 492 WP_007611735.1 CcdC protein domain-containing protein -
  LJA36_RS00405 - 143132..143494 (-) 363 WP_033574804.1 response regulator -
  LJA36_RS00410 - 143579..144286 (-) 708 WP_088056486.1 cytochrome c biogenesis protein CcdA -
  LJA36_RS00415 - 144488..144661 (+) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -
  LJA36_RS00420 - 144735..144953 (-) 219 WP_003153994.1 YneF family protein -
  LJA36_RS00425 sirA 145039..145485 (-) 447 WP_003153995.1 sporulation inhibitor of replication protein SirA -
  LJA36_RS00430 recP/tkt 145637..147640 (-) 2004 WP_007611727.1 transketolase Machinery gene
  LJA36_RS00435 - 147807..148040 (-) 234 WP_003153997.1 DUF896 domain-containing protein -
  LJA36_RS00440 - 148109..148759 (-) 651 WP_003153998.1 recombinase family protein -
  LJA36_RS00445 yneA 148775..149086 (-) 312 WP_003154001.1 cell division suppressor protein YneA -
  LJA36_RS00450 dinR/lexA 149243..149863 (+) 621 WP_003154004.1 transcriptional repressor LexA Regulator
  LJA36_RS00455 - 150203..150631 (-) 429 WP_015417546.1 hypothetical protein -
  LJA36_RS00460 - 150785..151234 (+) 450 WP_003154009.1 YndM family protein -
  LJA36_RS00465 - 151262..152092 (-) 831 WP_007410333.1 prohibitin family protein -
  LJA36_RS00470 - 152079..152228 (-) 150 WP_007410334.1 hypothetical protein -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 72541.75 Da        Isoelectric Point: 4.9029

>NTDB_id=538017 LJA36_RS00430 WP_007611727.1 145637..147640(-) (recP/tkt) [Bacillus amyloliquefaciens strain TPS17]
MDTIEKKSVATIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNVNPQNPGWFNRDRFVLSAGHGSMLLYSMLHLSG
YDLSIEDLKQFRQWGSKTPGHPEFGHTAGVDATTGPLGQGIAMAVGMAIAERHLAETYNRDSFNVVDHYTYSICGDGDLM
EGISSEAASLAGHLELGRLIVLYDSNDISLDGDLDRSFSENVKQRFEAMNWEVLYVEDGNNIAELTAAIEKARQNDKKPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGLEESKLTKEAYAWTFEEDFYVPEEVYGHFNQAVKEAGSKKEQEWNELFAAYKE
KYPELAEQLSLGMKGELPKDWDQEVPVYEKGSSLASRASSGEVLNGIAKKIPFFVGGSADLAGSNKTTIKNGGDFTAKDY
AGKNFWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLASLMGLPVTYVFTHDSIAVGEDGPTHEPIEQLA
SLRALPNLSVIRPADGNETAAAWKVAVQSQDHPTALVLTRQNLPTIDQQAEEAYAGVEKGAYIVSKAQTESPAALLLATG
SEVGLAIEAQAKLAEENIHVSVVSMPSWDRFEKQSAEYKNSVLPPNVTKRLAIEMGSSFGWGKFTGLEGDVLAIDRFGAS
APGETIMKEYGFTAENVVDRVKKLLNK

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=538017 LJA36_RS00430 WP_007611727.1 145637..147640(-) (recP/tkt) [Bacillus amyloliquefaciens strain TPS17]
ATGGATACAATTGAAAAGAAATCAGTTGCCACCATTCGTACACTATCTATAGACGCAATTGAAAAAGCGAATTCCGGACA
TCCGGGCATGCCGATGGGAGCCGCTCCGATGGCATATACGCTGTGGACGAAATTTATGAATGTAAACCCGCAGAATCCGG
GCTGGTTTAACCGCGACCGCTTTGTTTTATCAGCAGGCCACGGTTCAATGCTTTTATACAGCATGCTGCATTTAAGCGGA
TATGACCTCAGCATTGAAGACTTGAAACAGTTCCGTCAATGGGGAAGCAAAACACCGGGACATCCGGAGTTCGGGCACAC
AGCCGGAGTAGACGCAACGACCGGGCCGCTTGGACAGGGTATTGCAATGGCAGTGGGAATGGCAATTGCAGAACGCCATC
TGGCTGAGACATATAACCGTGATTCTTTCAACGTAGTTGATCATTATACATACAGTATTTGCGGAGACGGTGATTTAATG
GAAGGCATTTCTTCCGAAGCCGCTTCTCTTGCAGGCCATCTTGAATTAGGCCGCCTGATCGTATTATACGATTCTAATGA
CATTTCCTTAGACGGCGATTTAGACCGTTCTTTCTCTGAAAATGTAAAGCAGCGTTTTGAAGCAATGAACTGGGAAGTTC
TTTATGTTGAGGACGGAAACAACATCGCTGAATTGACGGCTGCAATTGAAAAAGCGCGCCAGAATGATAAAAAACCGACT
TTGATTGAAGTGAAAACCACGATCGGTTTCGGCTCTCCAAACCGTGCGGGCACATCCGGCGTTCACGGCGCTCCGTTAGG
ACTAGAAGAGAGCAAGCTGACAAAAGAAGCGTATGCTTGGACGTTTGAAGAAGATTTTTATGTTCCGGAAGAAGTATACG
GGCATTTCAATCAAGCTGTAAAAGAAGCCGGCTCGAAAAAAGAACAGGAATGGAATGAACTGTTCGCGGCTTATAAAGAA
AAATATCCTGAGCTTGCTGAACAGCTGTCACTCGGCATGAAAGGCGAGCTTCCTAAAGACTGGGATCAGGAAGTTCCCGT
TTATGAAAAAGGCAGCAGCCTTGCTTCCCGCGCATCTTCAGGTGAGGTGCTGAACGGGATCGCCAAGAAAATTCCTTTCT
TTGTCGGGGGATCTGCTGACCTTGCGGGTTCAAATAAAACGACAATCAAAAATGGAGGAGACTTCACGGCCAAAGACTAC
GCCGGGAAAAACTTCTGGTTCGGTGTCCGTGAATTTGCGATGGGCGCTGCATTAAACGGAATGGCGCTTCACGGCGGCCT
CCGCGTATTCGGCGGCACATTCTTTGTGTTCTCTGATTATTTAAGACCTGCCATTCGTCTGGCGTCATTGATGGGTCTTC
CCGTCACTTATGTATTCACGCATGACAGTATTGCCGTAGGAGAGGACGGGCCGACTCACGAACCGATTGAGCAGCTTGCT
TCTTTACGCGCACTTCCTAACCTTTCTGTGATCAGACCTGCTGACGGAAATGAAACCGCAGCTGCATGGAAGGTTGCCGT
TCAAAGCCAAGATCATCCGACAGCTCTTGTATTGACACGCCAAAACCTGCCGACGATTGATCAGCAGGCTGAAGAAGCGT
ATGCGGGCGTGGAAAAAGGGGCTTATATCGTTTCAAAAGCCCAAACGGAATCACCGGCCGCTCTTCTTTTAGCGACAGGT
TCTGAAGTCGGACTTGCGATCGAAGCTCAAGCGAAACTGGCTGAAGAAAACATTCACGTATCTGTAGTCAGCATGCCGAG
CTGGGACCGCTTTGAAAAACAATCGGCCGAGTACAAAAACAGCGTGCTTCCTCCGAATGTGACGAAACGTCTTGCGATCG
AAATGGGTTCAAGCTTCGGATGGGGCAAATTTACCGGTCTTGAAGGAGACGTTCTCGCAATTGACCGTTTCGGTGCTTCA
GCTCCGGGAGAAACAATTATGAAAGAATACGGGTTTACTGCAGAAAACGTGGTTGACCGCGTGAAAAAACTTTTAAACAA
ATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-338)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)

Transketolase, C-terminal domain (Transketolase_C)

(549-657)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z556

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.061

98.951

0.555