Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   SPB_RS04020 Genome accession   NZ_AEUT02000001
Coordinates   795659..796141 (-) Length   160 a.a.
NCBI ID   WP_003108263.1    Uniprot ID   A0ABN0IRY3
Organism   Streptococcus parauberis NCFD 2020     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 790659..801141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS04000 (SPB_0824) budA 790706..791425 (-) 720 WP_003106097.1 acetolactate decarboxylase -
  SPB_RS04005 (SPB_0825) alsS 791438..793114 (-) 1677 WP_003103163.1 acetolactate synthase AlsS -
  SPB_RS04010 (SPB_0826) - 793235..794467 (-) 1233 WP_003104051.1 lipopolysaccharide assembly protein LapB -
  SPB_RS04015 (SPB_0827) - 794457..795638 (-) 1182 WP_003104801.1 AI-2E family transporter -
  SPB_RS04020 (SPB_0828) mutX 795659..796141 (-) 483 WP_003108263.1 8-oxo-dGTP diphosphatase Machinery gene
  SPB_RS04025 (SPB_0829) - 796393..797403 (+) 1011 WP_003104420.1 lactonase family protein -
  SPB_RS04030 (SPB_0830) - 797466..797657 (+) 192 WP_003103548.1 hypothetical protein -
  SPB_RS04035 (SPB_0831) rfbB 797687..798733 (-) 1047 WP_003102477.1 dTDP-glucose 4,6-dehydratase -
  SPB_RS04040 (SPB_0832) - 798755..799348 (-) 594 WP_003105922.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  SPB_RS04045 (SPB_0833) rfbA 799348..800217 (-) 870 WP_003104922.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18867.19 Da        Isoelectric Point: 4.2760

>NTDB_id=53800 SPB_RS04020 WP_003108263.1 795659..796141(-) (mutX) [Streptococcus parauberis NCFD 2020]
MMQLATICYIDNGDSLLLLHRNKKENDIHEGKWISVGGKLESGESPDECAIREIFEETHLTVKEMDFKGVITFPEFTPGL
DWYTYVFKVTDFEGQLISDEESREGTLEWVPYDEVLKKPTWEGDYEIFKWILEDRPFFSAKFTYDKSNQLIDQSVHFYEK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=53800 SPB_RS04020 WP_003108263.1 795659..796141(-) (mutX) [Streptococcus parauberis NCFD 2020]
ATGATGCAATTAGCAACAATTTGTTATATTGATAATGGAGACTCATTATTACTATTACACCGAAATAAAAAAGAGAATGA
TATTCATGAAGGGAAATGGATTTCTGTGGGTGGTAAACTTGAATCTGGCGAGAGTCCTGATGAATGTGCTATTCGTGAGA
TATTTGAAGAAACACATCTAACTGTTAAAGAGATGGACTTTAAGGGTGTGATTACTTTTCCTGAATTTACACCTGGTCTT
GATTGGTATACTTACGTTTTTAAAGTGACGGACTTTGAAGGACAATTGATTTCAGACGAAGAATCTCGAGAAGGAACTTT
AGAATGGGTTCCTTATGATGAAGTCTTAAAGAAACCAACTTGGGAAGGTGATTATGAAATCTTCAAGTGGATTTTAGAAG
ATCGTCCATTCTTTTCAGCTAAATTTACTTATGATAAATCAAATCAATTAATTGATCAATCTGTACACTTCTATGAAAAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

71.069

99.375

0.706

Multiple sequence alignment