Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LIN52_RS08815 Genome accession   NZ_CP085188
Coordinates   1843061..1844485 (-) Length   474 a.a.
NCBI ID   WP_053908459.1    Uniprot ID   -
Organism   Escherichia coli strain EC195     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1838061..1849485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN52_RS08785 (LIN52_08785) yeeZ 1838116..1838940 (+) 825 WP_053908453.1 SDR family oxidoreductase -
  LIN52_RS08790 (LIN52_08790) yeeY 1838986..1839915 (+) 930 WP_053908455.1 LysR substrate-binding domain-containing protein -
  LIN52_RS08795 (LIN52_08795) yoeI 1840130..1840192 (+) 63 WP_010723108.1 membrane protein YoeI -
  LIN52_RS08800 (LIN52_08800) plaP 1840182..1841540 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LIN52_RS08805 (LIN52_08805) tsuA 1841719..1842777 (+) 1059 WP_053908457.1 thiosulfate utilization transporter TsuA/YeeE -
  LIN52_RS08810 (LIN52_08810) tsuB 1842791..1843018 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LIN52_RS08815 (LIN52_08815) sbcB 1843061..1844485 (-) 1425 WP_053908459.1 exodeoxyribonuclease I Machinery gene
  LIN52_RS08820 (LIN52_08820) - 1844667..1845845 (+) 1179 Protein_1729 tyrosine-type recombinase/integrase -
  LIN52_RS08825 (LIN52_08825) - 1845826..1846017 (-) 192 WP_000132739.1 helix-turn-helix transcriptional regulator -
  LIN52_RS08830 (LIN52_08830) - 1846122..1846301 (-) 180 WP_053908461.1 Eag protein -
  LIN52_RS08835 (LIN52_08835) - 1846305..1846895 (+) 591 Protein_1732 metallophosphoesterase -
  LIN52_RS08840 (LIN52_08840) - 1846892..1847515 (+) 624 WP_053908465.1 antitermination protein -
  LIN52_RS08845 (LIN52_08845) - 1847949..1848272 (+) 324 WP_000783734.1 phage holin, lambda family -
  LIN52_RS08850 (LIN52_08850) - 1848256..1848732 (+) 477 WP_000229392.1 glycoside hydrolase family protein -
  LIN52_RS08855 (LIN52_08855) - 1848729..1849166 (+) 438 WP_053908467.1 lysis protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54394.72 Da        Isoelectric Point: 5.4736

>NTDB_id=537967 LIN52_RS08815 WP_053908459.1 1843061..1844485(-) (sbcB) [Escherichia coli strain EC195]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIKKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=537967 LIN52_RS08815 WP_053908459.1 1843061..1844485(-) (sbcB) [Escherichia coli strain EC195]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
AGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTAAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

99.156

0.582