Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6K63_RS08965 Genome accession   NZ_CP070020
Coordinates   1966157..1966780 (+) Length   207 a.a.
NCBI ID   WP_004100775.1    Uniprot ID   A0AAD3YQU3
Organism   Klebsiella oxytoca strain FDAARGOS_1333     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1961157..1971780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K63_RS08945 (I6K63_08945) - 1961256..1963013 (-) 1758 WP_017146190.1 Lon protease family protein -
  I6K63_RS08950 (I6K63_08950) matP 1963199..1963651 (+) 453 WP_004100768.1 macrodomain Ter protein MatP -
  I6K63_RS08955 (I6K63_08955) ompA 1963762..1964832 (-) 1071 WP_004100770.1 porin OmpA -
  I6K63_RS08960 (I6K63_08960) sulA 1965186..1965695 (-) 510 WP_024273980.1 SOS-induced cell division inhibitor SulA -
  I6K63_RS08965 (I6K63_08965) sxy/tfoX 1966157..1966780 (+) 624 WP_004100775.1 TfoX/Sxy family DNA transformation protein Regulator
  I6K63_RS08970 (I6K63_08970) yccS 1966768..1968903 (-) 2136 WP_196558052.1 YccS family putative transporter -
  I6K63_RS08975 (I6K63_08975) - 1968921..1969367 (-) 447 WP_004100782.1 YccF domain-containing protein -
  I6K63_RS08980 (I6K63_08980) helD 1969490..1971544 (+) 2055 WP_196558051.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23688.71 Da        Isoelectric Point: 10.2095

>NTDB_id=537880 I6K63_RS08965 WP_004100775.1 1966157..1966780(+) (sxy/tfoX) [Klebsiella oxytoca strain FDAARGOS_1333]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=537880 I6K63_RS08965 WP_004100775.1 1966157..1966780(+) (sxy/tfoX) [Klebsiella oxytoca strain FDAARGOS_1333]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGTCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGCGCTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCTAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGCCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493