Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SPB_RS01670 Genome accession   NZ_AEUT02000001
Coordinates   332337..334073 (+) Length   578 a.a.
NCBI ID   WP_003102488.1    Uniprot ID   A0ABN0IT87
Organism   Streptococcus parauberis NCFD 2020     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 327337..339073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS01650 (SPB_0337) dapB 327880..328647 (+) 768 WP_003105813.1 4-hydroxy-tetrahydrodipicolinate reductase -
  SPB_RS01655 (SPB_0338) - 328644..329855 (+) 1212 WP_003102825.1 CCA tRNA nucleotidyltransferase -
  SPB_RS01660 (SPB_0339) - 329848..331725 (+) 1878 WP_003104195.1 ABC-F family ATP-binding cassette domain-containing protein -
  SPB_RS01665 (SPB_0340) - 331729..332202 (+) 474 WP_003105038.1 GNAT family N-acetyltransferase -
  SPB_RS01670 (SPB_0341) rcrP 332337..334073 (+) 1737 WP_003102488.1 ABC transporter ATP-binding protein Regulator
  SPB_RS01675 (SPB_0342) rcrQ 334073..335842 (+) 1770 WP_003103430.1 ABC transporter ATP-binding protein Regulator
  SPB_RS01680 (SPB_0343) gdhA 335973..337319 (+) 1347 WP_003102566.1 NADP-specific glutamate dehydrogenase -
  SPB_RS01685 (SPB_0344) - 337386..337796 (+) 411 WP_003104023.1 peptide deformylase -
  SPB_RS01690 (SPB_0345) - 337834..338019 (-) 186 WP_003102863.1 hypothetical protein -
  SPB_RS10955 - 338169..338348 (-) 180 Protein_339 hypothetical protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65239.69 Da        Isoelectric Point: 5.1015

>NTDB_id=53786 SPB_RS01670 WP_003102488.1 332337..334073(+) (rcrP) [Streptococcus parauberis NCFD 2020]
MGLIWSYLKNKKYWLFLDFVGAIFFVLVNLGLPTILAKMIDQGVVQNNTDALYYWAMMMFIIVVLGVIGRIILSYASSKL
TTTMIKELRNDMYSRLQDYSHTEYEKIGVSSLVTRITNDAFVLMQFAEMSLRLGVVTPLMMIFSVVMILLTSPSLAWIVA
VLMPLLVFVVIYVAIKTKPLSEKQQNTLDKINQLVRENLTGLRVIRAFSREDFQEERFAQKNQEYAETSRQLFTLTGLTE
PLFVQIIIAMIVAIVWFALDPLTNQEIKIGDLVAFIEYSFHAMFSFLMFANLFTMYPRMSVSSKRINEVLDMPISISKNE
DGITESETKGYLEFDNVTFSYPGETENPVLQNISFKTKPGETIAFIGSTGSGKSSLVNLIPRFFDVTFGRILVDGIDVRD
YQLKALRAKIGFIPQKALLFTGTIEDNLKYGKADASLPELDQATEVSQAREFIASREEGYQTHLAEAGSNLSGGQKQRLS
IARAVVKKPDIYIFDDSFSALDYKTDAELRRRLKEVTDNATVLIVAQRVGTIMDADQIIVLDQGQIVGRGTHEELLESNE
IYAEIAKSQLNSKKEVAD

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=53786 SPB_RS01670 WP_003102488.1 332337..334073(+) (rcrP) [Streptococcus parauberis NCFD 2020]
ATGGGATTAATTTGGTCTTATTTAAAAAACAAAAAGTATTGGCTGTTTTTAGATTTTGTAGGAGCTATTTTTTTCGTATT
AGTTAACTTAGGACTCCCGACAATTTTGGCCAAGATGATTGACCAAGGAGTTGTTCAAAACAATACAGATGCTTTATATT
ATTGGGCTATGATGATGTTTATCATTGTTGTCTTAGGAGTTATTGGACGGATCATTCTATCCTATGCTTCCAGCAAATTA
ACAACAACAATGATTAAGGAACTTCGCAATGACATGTACAGCCGCTTGCAGGACTATTCTCATACGGAGTATGAGAAAAT
TGGTGTCTCATCATTGGTGACTCGGATAACAAATGACGCCTTTGTACTTATGCAATTTGCTGAAATGTCATTAAGATTAG
GTGTTGTGACACCATTGATGATGATTTTTTCTGTGGTGATGATACTATTAACCAGTCCTTCGCTTGCTTGGATTGTGGCT
GTATTGATGCCATTACTAGTTTTTGTAGTTATTTATGTTGCTATCAAAACCAAACCCTTATCTGAGAAACAACAAAATAC
GCTGGATAAGATTAACCAGCTTGTTCGCGAAAATTTAACAGGTTTACGTGTTATCAGAGCTTTTTCAAGAGAGGACTTTC
AAGAAGAACGTTTTGCTCAAAAGAACCAAGAATATGCTGAAACATCACGTCAATTATTCACACTGACTGGTTTGACAGAG
CCTTTATTTGTCCAAATTATTATTGCAATGATTGTAGCAATTGTCTGGTTTGCTTTAGATCCTTTAACAAATCAAGAAAT
CAAAATTGGTGACTTAGTAGCATTTATTGAATATAGTTTCCATGCCATGTTCTCTTTCTTGATGTTTGCCAATCTCTTTA
CCATGTACCCTCGCATGTCTGTTTCAAGCAAGCGAATTAATGAAGTGCTGGATATGCCAATTTCAATTTCCAAAAATGAG
GATGGGATTACTGAAAGTGAAACTAAAGGTTACCTTGAATTTGATAATGTTACCTTTTCTTATCCTGGAGAGACAGAAAA
TCCTGTCCTTCAAAATATCTCATTTAAAACAAAACCTGGGGAAACCATTGCTTTTATTGGATCGACAGGGTCAGGTAAGT
CATCCCTTGTTAATTTAATCCCTCGATTCTTTGATGTTACATTCGGGAGAATACTGGTCGACGGCATCGATGTCAGAGAT
TACCAACTAAAAGCTTTGCGTGCAAAGATAGGCTTTATTCCACAAAAAGCTCTGCTATTCACCGGGACTATCGAAGATAA
TCTAAAATATGGAAAAGCAGATGCTAGCCTACCAGAACTAGATCAAGCCACAGAGGTTTCTCAGGCTCGCGAATTTATAG
CCAGCCGTGAGGAAGGTTATCAAACGCATTTGGCTGAGGCTGGAAGCAATCTATCTGGAGGACAAAAGCAAAGATTGTCG
ATTGCCCGAGCAGTCGTTAAAAAACCAGATATTTACATCTTTGATGATTCCTTCTCAGCATTAGATTATAAGACAGATGC
CGAATTAAGAAGACGCTTGAAAGAAGTGACGGACAATGCAACTGTCTTAATTGTCGCTCAGCGTGTTGGAACAATTATGG
ATGCTGATCAAATCATTGTTCTTGATCAAGGACAAATTGTTGGTCGAGGGACGCATGAAGAATTACTAGAAAGTAATGAG
ATTTATGCTGAAATTGCCAAATCTCAATTAAATAGTAAAAAGGAGGTAGCTGACTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(16-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.21

91.522

0.377

Multiple sequence alignment