Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LIN51_RS00875 Genome accession   NZ_CP085183
Coordinates   185994..186977 (+) Length   327 a.a.
NCBI ID   WP_001196496.1    Uniprot ID   Q3YVS2
Organism   Escherichia coli strain EC7518     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 180994..191977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN51_RS00860 (LIN51_00860) dppA 182294..183901 (+) 1608 WP_001222883.1 dipeptide ABC transporter substrate-binding protein DppA -
  LIN51_RS00865 (LIN51_00865) dppB 184052..185071 (+) 1020 WP_000938855.1 dipeptide ABC transporter permease DppB -
  LIN51_RS00870 (LIN51_00870) dppC 185081..185983 (+) 903 WP_000084677.1 dipeptide ABC transporter permease DppC -
  LIN51_RS00875 (LIN51_00875) amiE 185994..186977 (+) 984 WP_001196496.1 dipeptide ABC transporter ATP-binding protein Regulator
  LIN51_RS00880 (LIN51_00880) dppF 186974..187978 (+) 1005 WP_000107035.1 dipeptide ABC transporter ATP-binding subunit DppF -
  LIN51_RS00885 (LIN51_00885) yhjV 188008..189279 (-) 1272 WP_001307456.1 aromatic amino acid transport family protein -
  LIN51_RS00890 (LIN51_00890) - 189755..189862 (+) 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -
  LIN51_RS00895 (LIN51_00895) - 190238..190345 (+) 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35814.38 Da        Isoelectric Point: 6.7584

>NTDB_id=537856 LIN51_RS00875 WP_001196496.1 185994..186977(+) (amiE) [Escherichia coli strain EC7518]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLVFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide


Download         Length: 984 bp        

>NTDB_id=537856 LIN51_RS00875 WP_001196496.1 185994..186977(+) (amiE) [Escherichia coli strain EC7518]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCACCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTTGGGATTGTGGGTGAGTCCGGCTCCGGTAAGTCGGTCAGTTCCCTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCGGAAAAACTGGTGTTTAACGGTCAGGATTTGCAGCGTATCTCGGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGGGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCTTCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGACCAAAACTGCTGATTGCCGATGAGCCGACCACCGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTGTTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACGGGCGATGCGCATGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCGGAATTTGCTCAGGACAAAGAACGTCT
GGCATCGTTGCCTGGCGTCGTTCCCGGCAAGTACGATCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCCACACTATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(24-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3YVS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

43.302

98.165

0.425
  amiE Streptococcus thermophilus LMG 18311

42.991

98.165

0.422
  amiE Streptococcus thermophilus LMD-9

42.991

98.165

0.422
  oppD Streptococcus mutans UA159

41.066

97.554

0.401