Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6K18_RS24465 Genome accession   NZ_CP070007
Coordinates   5023379..5024008 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain FDAARGOS_1288     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 5018379..5029008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K18_RS24450 (I6K18_24450) helD 5018621..5020675 (-) 2055 WP_001305911.1 DNA helicase IV -
  I6K18_RS24455 (I6K18_24455) yccF 5020798..5021244 (+) 447 WP_001261235.1 YccF domain-containing protein -
  I6K18_RS24460 (I6K18_24460) yccS 5021254..5023416 (+) 2163 WP_000875041.1 YccS family putative transporter -
  I6K18_RS24465 (I6K18_24465) sxy/tfoX 5023379..5024008 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6K18_RS24470 (I6K18_24470) sulA 5024227..5024736 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  I6K18_RS24475 (I6K18_24475) ompA 5025092..5026132 (+) 1041 WP_001309394.1 porin OmpA -
  I6K18_RS24480 (I6K18_24480) matP 5026208..5026660 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  I6K18_RS24485 (I6K18_24485) ycbZ 5026846..5028606 (+) 1761 WP_000156482.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=537851 I6K18_RS24465 WP_000839153.1 5023379..5024008(-) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1288]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=537851 I6K18_RS24465 WP_000839153.1 5023379..5024008(-) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1288]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1