Detailed information NTG0053785

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SPB_RS01320
• Genome accession: NZ_AEUT02000001
• Coordinates: 261376..262485 (+)
• Length: 369 a.a.
• NCBI ID: WP_003105447.1
• Uniprot ID: A0ABN0ITI9
• Organism: Streptococcus parauberis NCFD 2020
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 256376..267485

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPB_RS01295 (SPB_0263)	-	256678..257808 (+)	1131	WP_003104056.1	aminotransferase	-
SPB_RS01300 (SPB_0264)	-	257823..258635 (+)	813	WP_003104103.1	transporter substrate-binding domain-containing protein	-
SPB_RS01305 (SPB_0265)	rpsU	258763..258939 (+)	177	WP_000048058.1	30S ribosomal protein S21	-
SPB_RS01310 (SPB_0266)	mscL	259049..259429 (-)	381	WP_003104850.1	large conductance mechanosensitive channel protein MscL	-
SPB_RS01315 (SPB_0267)	dnaG	259556..261367 (+)	1812	WP_003103627.1	DNA primase	-
SPB_RS01320 (SPB_0268)	rpoS	261376..262485 (+)	1110	WP_003105447.1	RNA polymerase sigma factor RpoD	Regulator
SPB_RS01325 (SPB_0269)	-	262639..262977 (+)	339	WP_003104519.1	metal-sulfur cluster assembly factor	-
SPB_RS01330 (SPB_0270)	rfbD	263069..263920 (+)	852	WP_003103693.1	dTDP-4-dehydrorhamnose reductase	-
SPB_RS01335 (SPB_0271)	cps2T	264036..265190 (+)	1155	WP_003103766.1	beta 1-4 rhamnosyltransferase Cps2T	-
SPB_RS01340 (SPB_0272)	-	265180..266112 (+)	933	WP_003105744.1	glycosyltransferase family 2 protein	-
SPB_RS01345 (SPB_0273)	-	266116..266919 (+)	804	WP_003103004.1	ABC transporter permease	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42201.87 Da
• Isoelectric Point: 4.4893

>NTDB_id=53785 SPB_RS01320 WP_003105447.1 261376..262485(+) (rpoS) [Streptococcus parauberis NCFD 2020]
MAKENDITTFNVQVADFIRNHKKEGSAVDDEITEKLVIPFVLDADQIDDLLERLTDGGISITDKEGNPSSKYVVEEPKPE
ELTDEQLIGSNSAKVNDPVRMYLKEIGVVPLLTGEEEKELAVAVDEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFIED

Nucleotide

• Length: 1110 bp

>NTDB_id=53785 SPB_RS01320 WP_003105447.1 261376..262485(+) (rpoS) [Streptococcus parauberis NCFD 2020]
ATGGCCAAAGAAAACGATATTACAACTTTTAACGTTCAAGTTGCAGATTTTATTCGTAATCATAAAAAAGAAGGATCTGC
AGTTGATGATGAAATTACAGAAAAATTAGTTATCCCATTCGTTTTAGATGCTGACCAAATTGATGATTTATTAGAACGCC
TGACTGATGGCGGTATTTCTATCACAGATAAAGAAGGAAATCCTTCATCTAAATATGTTGTTGAAGAACCAAAACCTGAA
GAACTTACAGATGAGCAATTAATCGGAAGTAATTCAGCTAAGGTAAATGATCCAGTTCGTATGTACTTGAAAGAAATTGG
GGTTGTTCCACTATTAACTGGTGAAGAAGAAAAAGAATTAGCAGTAGCTGTTGATGAAGGCGATTTAGAAGCTAAACAAC
GTCTGGCTGAAGCTAATTTACGTCTTGTAGTATCTATTGCTAAACGCTATGTTGGTCGTGGCATGCAATTTTTGGATTTA
ATTCAAGAAGGTAATATGGGGCTTATGAAAGCAGTTGATAAGTTTGACTATTCTAAAGGTTTTAAATTTTCAACTTATGC
AACATGGTGGATTCGCCAAGCAATTACACGTGCCATCGCCGACCAAGCACGTACTATTCGTATTCCAGTACATATGGTCG
AAACGATTAATAAATTAGTTAGAGAACAACGTAATTTGTTACAAGAATTAGGACAAGACCCAACGCCAGAACAAATTGCT
GAGCGTATGGAAATGACACCTGATAAAGTACGTGAAATTCTAAAAATTGCTCAAGAACCTGTTTCACTTGAAACTCCTAT
TGGTGAAGAAGATGATAGCCATCTTGGTGATTTTATTGAAGATGAAGTGATTGAAAATCCAGTAGATTATACAACACGTG
TTGTTTTACGTGAACAATTAGATGAAGTTTTAGATACATTAACTGACCGTGAAGAAAATGTATTGAGACTACGTTTTGGT
CTTGATGATGGGAAAATGCGTACTTTAGAAGATGTTGGTAAAGTTTTCAACGTTACAAGAGAGCGTATCCGTCAAATTGA
AGCCAAAGCACTCCGCAAACTCCGCCACCCAAGCAGAAGCAAACAATTAAGAGACTTTATTGAGGACTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (135-204)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (13-84)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (97-129)

• Sigma-70, region 4 (Sigma70_r4) (303-356)

• Sigma-70 region 3 (Sigma70_r3) (214-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	45.578	79.675	0.363