Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   LIN98_RS09750 Genome accession   NZ_CP085096
Coordinates   1991280..1992023 (-) Length   247 a.a.
NCBI ID   WP_148326111.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 4S     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1986280..1997023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN98_RS09730 rimI 1986438..1986881 (+) 444 WP_005590261.1 ribosomal protein S18-alanine N-acetyltransferase -
  LIN98_RS09735 recC 1986883..1990299 (-) 3417 WP_014167945.1 exodeoxyribonuclease V subunit gamma -
  LIN98_RS09740 comQ 1990311..1990613 (-) 303 WP_005545595.1 DUF5374 domain-containing protein Machinery gene
  LIN98_RS09745 comP 1990588..1991283 (-) 696 WP_148321775.1 DUF2572 family protein Machinery gene
  LIN98_RS09750 comO 1991280..1992023 (-) 744 WP_148326111.1 type II secretion system protein J Machinery gene
  LIN98_RS10455 - 1992010..1992144 (-) 135 Protein_1874 type IV pilus minor pilin ComGF family protein -
  LIN98_RS10460 - 1992179..1992316 (-) 138 Protein_1875 type II secretion system protein -
  LIN98_RS09770 pal 1992926..1993393 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  LIN98_RS09775 tolB 1993408..1994688 (-) 1281 WP_005545588.1 Tol-Pal system beta propeller repeat protein TolB -
  LIN98_RS09780 tolA 1994723..1995931 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -
  LIN98_RS09785 tolR 1995948..1996370 (-) 423 WP_005545585.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28563.70 Da        Isoelectric Point: 8.6818

>NTDB_id=537848 LIN98_RS09750 WP_148326111.1 1991280..1992023(-) (comO) [Aggregatibacter actinomycetemcomitans strain 4S]
MMKNRAFFHVPPYHGQSLVALMISVALSSSLFLVIMQFYSQHQQQNREMLLRLQLQMELQRVIQLMGKDLARSGFRAVNN
KLKQNNIALFEQENTPSAVTIAQVNGEKNNSCVLFFYDLDANGCIGGNYKGDACVVNGRNNTREIERELFGYRLNQNMLE
TRLTYKSAVKQNCIQEECRRYTQQSACHYGGWADLLDEKEYEISQLSFDWLSEQKGIKIRLSGRFKRHKQIEYETSMIVP
LLNGAKE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=537848 LIN98_RS09750 WP_148326111.1 1991280..1992023(-) (comO) [Aggregatibacter actinomycetemcomitans strain 4S]
ATGATGAAGAATAGAGCGTTTTTCCACGTGCCGCCTTATCACGGGCAAAGCCTTGTTGCGCTGATGATTTCCGTGGCGCT
TTCGAGCTCTTTATTTCTCGTCATCATGCAGTTTTATAGCCAACATCAGCAACAAAATCGGGAAATGTTACTGCGTTTGC
AGTTACAAATGGAATTACAACGCGTCATTCAATTAATGGGGAAAGATTTGGCAAGAAGCGGTTTTCGTGCCGTGAATAAT
AAATTAAAACAAAATAATATCGCCTTATTTGAGCAAGAAAATACACCATCGGCAGTGACCATCGCGCAAGTGAATGGCGA
GAAAAATAACAGCTGCGTGTTGTTCTTTTATGACTTGGATGCCAATGGGTGTATCGGCGGAAATTATAAAGGCGATGCTT
GTGTTGTGAACGGGCGTAACAATACAAGAGAAATTGAGCGCGAATTGTTCGGCTATCGACTTAACCAAAACATGCTGGAA
ACTCGTTTGACCTACAAAAGTGCGGTGAAGCAAAACTGCATACAAGAAGAATGCCGCCGTTATACGCAACAATCCGCGTG
CCATTACGGTGGTTGGGCAGATTTACTGGACGAGAAAGAATATGAAATTTCGCAGTTGAGTTTTGATTGGCTGTCGGAAC
AAAAGGGGATTAAAATTCGCCTCAGTGGACGTTTTAAACGACATAAACAGATCGAATATGAAACCTCCATGATCGTGCCT
TTATTAAACGGAGCCAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

51.923

84.211

0.437