Detailed information NTG0537837

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LIN98_RS06485
• Genome accession: NZ_CP085096
• Coordinates: 1272128..1273552 (-)
• Length: 474 a.a.
• NCBI ID: WP_187370360.1
• Uniprot ID: -
• Organism: Aggregatibacter actinomycetemcomitans strain 4S
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1267128..1278552

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIN98_RS06455	-	1267498..1267668 (+)	171	WP_005544707.1	hypothetical protein	-
LIN98_RS06460	ftnA	1267730..1268227 (-)	498	WP_005544705.1	non-heme ferritin	-
LIN98_RS06465	ftnA	1268243..1268728 (-)	486	WP_005544704.1	non-heme ferritin	-
LIN98_RS06470	-	1269549..1270203 (-)	655	Protein_1238	phage/plasmid replication protein	-
LIN98_RS06475	-	1270904..1271710 (-)	807	WP_249847582.1	IS3 family transposase	-
LIN98_RS06480	-	1271707..1272046 (-)	340	Protein_1240	helix-turn-helix domain-containing protein	-
LIN98_RS06485	sbcB	1272128..1273552 (-)	1425	WP_187370360.1	exodeoxyribonuclease I	Machinery gene
LIN98_RS06490	-	1273584..1274438 (-)	855	WP_005591967.1	DMT family transporter	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54850.36 Da
• Isoelectric Point: 5.1197

>NTDB_id=537837 LIN98_RS06485 WP_187370360.1 1272128..1273552(-) (sbcB) [Aggregatibacter actinomycetemcomitans strain 4S]
MAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDEDFNIIGEPIVLYCKQTNDYLPAPEAVLVTGITPQECNEKGLSEPE
FAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPS
FRLEKLTEANGIAHDSAHDAMSDVYATIEMAKLIKRKQPKLFQYFFENRGKKEVEKLIDTAEMMPLVHVSGMLGNYRGNT
TLIAPLAWHPTNKNAVIVCDLTADIDDLLTKSVGELRENLYTKKETLLAAGALPVPLKLIHINKCPIVAPAKTLLPQNSE
RLGIDQELCAQNRQRLQEAKDIRQKVMDIFHQEREFDASDNVETELYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDP
RIPELLFHYRARHFYRTLNRAEQIKWQKYCRKKLDAEALQFEQRLQELAEQYSNNEENLMLLQKVYEYGTKIIG

Nucleotide

• Length: 1425 bp

>NTDB_id=537837 LIN98_RS06485 WP_187370360.1 1272128..1273552(-) (sbcB) [Aggregatibacter actinomycetemcomitans strain 4S]
ATGGCAAAAAACGACTTTAGTTTTTTTATTTATGATTATGAAAGTTTTGGGGTCAATCCCGCAACGGATCGCCCGGCACA
ATTCGGTGGCATTCGCACTGACGAGGATTTTAATATTATCGGTGAGCCGATTGTTCTTTATTGCAAGCAAACTAACGATT
ATTTGCCTGCACCAGAAGCGGTTTTAGTCACCGGAATTACACCACAGGAATGCAACGAAAAAGGGCTGTCGGAACCCGAA
TTTGCCGCCAAAATTTTACAGGAATTCAGCCGTCCGAATACTTGCGTGATGGGCTTTAATAACATTCGTTATGACGATGA
AATGACCCGTTATACGTTTTACCGTAATTTTATCGATCCTTATGAATACAGCTGGAAAAACGGCAATTCCCGTTGGGATT
TACTGGATTTGGTGCGTGCTTGCTATGCGTTGCGCCCGGACGGTATTGAATGGCCTTTAGATGATGAAGGTATGCCGAGT
TTCCGCCTGGAAAAACTGACAGAGGCCAATGGAATAGCGCACGATAGTGCGCATGATGCCATGTCAGATGTGTATGCCAC
TATTGAAATGGCAAAGCTCATCAAGCGGAAACAGCCTAAATTATTCCAATATTTCTTTGAAAATCGGGGTAAAAAGGAGG
TTGAAAAGCTCATCGATACCGCAGAAATGATGCCATTGGTACATGTGTCGGGAATGTTGGGGAATTATCGCGGAAATACC
ACGTTAATTGCACCTTTAGCCTGGCATCCGACGAATAAAAATGCCGTTATTGTCTGTGATTTAACTGCCGATATTGATGA
TTTATTAACAAAATCGGTAGGGGAGTTGCGTGAAAATCTTTACACCAAAAAAGAGACCTTATTGGCTGCCGGTGCATTGC
CTGTGCCATTGAAGCTCATTCATATCAATAAATGTCCGATTGTTGCGCCGGCTAAAACTTTGTTGCCACAAAACTCCGAA
CGTTTAGGTATTGATCAGGAGTTATGTGCGCAAAACCGACAACGTTTGCAGGAAGCAAAAGATATTCGCCAAAAAGTAAT
GGATATTTTTCATCAGGAACGTGAATTTGACGCTTCCGATAATGTTGAAACCGAACTGTATAACGGCTTTTTTAGTGACG
CCGATAAAAACAATATGGCGATTTTACGCAGTTTGGAACCCGAAAAATTGGCTAAACATAATCTTAGTTTTCAAGATCCA
CGAATTCCTGAATTGCTGTTCCATTATCGTGCCAGACATTTCTATCGTACATTGAACCGTGCGGAACAAATTAAATGGCA
AAAATACTGCCGTAAAAAATTAGATGCCGAGGCTTTGCAATTTGAACAACGTCTTCAAGAATTAGCCGAACAATATTCCA
ACAATGAAGAAAATCTTATGTTATTGCAAAAGGTCTATGAATATGGAACGAAAATAATCGGTTAA

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (10-189)

• Exonuclease C-terminal (ExoI_SH3) (209-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	53.648	98.312	0.527