Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LIN98_RS01870 Genome accession   NZ_CP085096
Coordinates   370267..370902 (-) Length   211 a.a.
NCBI ID   WP_053330351.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 4S     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 365267..375902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN98_RS01845 - 365534..365818 (-) 285 WP_005548070.1 chaperone NapD -
  LIN98_RS01850 narQ 366094..367797 (+) 1704 WP_005548066.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  LIN98_RS01855 murB 367812..368837 (+) 1026 WP_005566996.1 UDP-N-acetylmuramate dehydrogenase -
  LIN98_RS01860 - 368853..369167 (+) 315 WP_005548062.1 DUF2322 family protein -
  LIN98_RS01865 rpoH 369352..370200 (+) 849 WP_005548059.1 RNA polymerase sigma factor RpoH -
  LIN98_RS01870 sxy/tfoX 370267..370902 (-) 636 WP_053330351.1 TfoX/Sxy family DNA transformation protein Regulator
  LIN98_RS01875 tuf 372190..373374 (-) 1185 WP_014167500.1 elongation factor Tu -
  LIN98_RS01880 fusA 373438..375540 (-) 2103 WP_005589288.1 elongation factor G -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24000.13 Da        Isoelectric Point: 10.4976

>NTDB_id=537814 LIN98_RS01870 WP_053330351.1 370267..370902(-) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain 4S]
MTTVSQRLKNEFKQLVDGEISIKNLFTGHGIFHSGIMFALHQNDSIFLRAEDELVPYLESLGAVAYSIDPNNTNKLALHR
YYQLPHSIRKNKPLFEKTVKLSIQQAKFKKVAEDLTKKERIKELANFSIKHERLLAKINIYTVSEFQKIGAIHSYFRLKK
LGVSANVELLWTLCAALKNKHASLLTEKEKSAILTKLNVLLAANGLRKVKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=537814 LIN98_RS01870 WP_053330351.1 370267..370902(-) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain 4S]
ATGACAACGGTATCTCAAAGACTCAAGAACGAATTCAAACAACTAGTAGATGGTGAAATCAGTATTAAAAATTTATTCAC
CGGACATGGTATATTTCATTCAGGAATAATGTTTGCACTTCATCAAAACGATAGCATTTTCTTGCGGGCTGAAGATGAGT
TAGTCCCTTACTTAGAAAGTTTAGGTGCTGTAGCTTATTCAATTGATCCCAATAATACGAATAAACTGGCACTCCACCGT
TACTATCAACTTCCTCATTCTATTCGTAAAAATAAGCCGTTATTTGAAAAAACCGTTAAATTGTCTATTCAACAGGCAAA
ATTTAAGAAAGTCGCTGAAGATTTGACAAAAAAAGAGCGAATTAAAGAATTGGCTAATTTTTCCATTAAGCATGAAAGAT
TGCTGGCTAAAATTAATATTTATACGGTAAGTGAATTTCAGAAGATCGGCGCAATTCACAGCTATTTTAGGTTAAAGAAA
CTGGGTGTTTCTGCCAACGTAGAATTGTTATGGACTTTATGCGCCGCATTAAAAAATAAGCATGCTTCGTTGCTTACGGA
AAAGGAAAAATCGGCAATTTTGACTAAATTAAATGTTTTACTTGCAGCAAATGGTTTGCGGAAAGTAAAGGCCTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(118-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

40

92.417

0.37