Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LIN97_RS03115 Genome accession   NZ_CP085095
Coordinates   592204..592839 (+) Length   211 a.a.
NCBI ID   WP_005548057.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 5R     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 587204..597839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN97_RS03105 fusA 587566..589668 (+) 2103 WP_005566415.1 elongation factor G -
  LIN97_RS03110 tuf 589732..590916 (+) 1185 WP_014167500.1 elongation factor Tu -
  LIN97_RS03115 sxy/tfoX 592204..592839 (+) 636 WP_005548057.1 TfoX/Sxy family DNA transformation protein Regulator
  LIN97_RS03120 rpoH 592906..593754 (-) 849 WP_005548059.1 RNA polymerase sigma factor RpoH -
  LIN97_RS03125 - 593939..594253 (-) 315 WP_005548062.1 DUF2322 family protein -
  LIN97_RS03130 murB 594269..595294 (-) 1026 WP_005566996.1 UDP-N-acetylmuramate dehydrogenase -
  LIN97_RS03135 narQ 595309..597012 (-) 1704 WP_005548066.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  LIN97_RS03140 - 597288..597572 (+) 285 WP_005548070.1 chaperone NapD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23952.09 Da        Isoelectric Point: 10.4976

>NTDB_id=537775 LIN97_RS03115 WP_005548057.1 592204..592839(+) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain 5R]
MTTVSQRLKNEFKQLVDGEISIKNLFTGHGIFHSGIMFALHQNDSIFLRAEDELVPYLESLGAVAYSIDPNNTNKLALHR
YYQLPHSIRKNKPLFEKTVKLSIQQAKFKKVAEDLTKKERIKELANFSIKHERLLAKINIYTVSEFQKIGAIHSYVRLKK
LGVSANVELLWTLCAALKNKHASLLTEKEKSAILTKLNVLLAANGLRKVKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=537775 LIN97_RS03115 WP_005548057.1 592204..592839(+) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain 5R]
ATGACAACGGTATCTCAAAGACTCAAGAACGAATTCAAACAACTAGTAGATGGTGAAATCAGTATTAAAAATTTATTCAC
CGGACATGGTATATTTCATTCAGGAATAATGTTTGCACTTCATCAAAACGATAGCATTTTCTTGCGGGCTGAAGATGAGT
TAGTCCCTTACTTAGAAAGTTTAGGTGCTGTAGCTTATTCAATTGATCCCAATAATACGAATAAACTGGCACTCCACCGT
TACTATCAACTTCCTCATTCTATTCGTAAAAATAAGCCGTTATTTGAAAAAACCGTTAAATTGTCTATTCAACAGGCAAA
ATTTAAGAAAGTCGCTGAAGATTTGACAAAAAAAGAGCGAATTAAAGAATTGGCTAATTTTTCCATTAAGCATGAAAGAT
TGCTGGCTAAAATTAATATTTATACGGTAAGTGAATTTCAGAAGATCGGCGCAATTCACAGCTATGTTAGGTTAAAGAAA
CTGGGTGTTTCTGCCAACGTAGAATTGTTATGGACTTTATGCGCCGCATTAAAAAATAAGCATGCTTCGTTGCTTACGGA
AAAGGAAAAATCGGCAATTTTGACTAAATTAAATGTTTTACTTGCAGCAAATGGTTTGCGGAAAGTAAAGGCCTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(118-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

40.513

92.417

0.374