Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6K34_RS09290 Genome accession   NZ_CP069990
Coordinates   1866385..1867014 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain FDAARGOS_1304     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1861385..1872014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K34_RS09275 (I6K34_09275) helD 1861627..1863681 (-) 2055 WP_001350178.1 DNA helicase IV -
  I6K34_RS09280 (I6K34_09280) yccF 1863804..1864250 (+) 447 WP_001261236.1 YccF domain-containing protein -
  I6K34_RS09285 (I6K34_09285) yccS 1864260..1866422 (+) 2163 WP_000875041.1 YccS family putative transporter -
  I6K34_RS09290 (I6K34_09290) sxy/tfoX 1866385..1867014 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6K34_RS09295 (I6K34_09295) sulA 1867233..1867742 (+) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  I6K34_RS09300 (I6K34_09300) ompA 1868098..1869138 (+) 1041 WP_001350588.1 porin OmpA -
  I6K34_RS09305 (I6K34_09305) matP 1869216..1869668 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  I6K34_RS09310 (I6K34_09310) ycbZ 1869854..1871614 (+) 1761 WP_000156501.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=537740 I6K34_RS09290 WP_000839136.1 1866385..1867014(-) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1304]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=537740 I6K34_RS09290 WP_000839136.1 1866385..1867014(-) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1304]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99