Detailed information NTG0537738

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LIN95_RS07530
• Genome accession: NZ_CP085094
• Coordinates: 1478467..1479891 (+)
• Length: 474 a.a.
• NCBI ID: WP_005568939.1
• Uniprot ID: -
• Organism: Aggregatibacter actinomycetemcomitans strain 5S
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1473467..1484891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIN95_RS07525	-	1477581..1478435 (+)	855	WP_005568937.1	DMT family transporter	-
LIN95_RS07530	sbcB	1478467..1479891 (+)	1425	WP_005568939.1	exodeoxyribonuclease I	Machinery gene
LIN95_RS07535	-	1479973..1480312 (+)	340	Protein_1462	helix-turn-helix domain-containing protein	-
LIN95_RS07540	-	1480559..1480864 (+)	306	WP_005566786.1	DUF2523 family protein	-
LIN95_RS07545	-	1480872..1481542 (+)	671	Protein_1464	zonular occludens toxin domain-containing protein	-
LIN95_RS07550	ftnA	1482363..1482848 (+)	486	WP_005544704.1	non-heme ferritin	-
LIN95_RS07555	ftnA	1482864..1483361 (+)	498	WP_005544705.1	non-heme ferritin	-
LIN95_RS07560	-	1483423..1483593 (-)	171	WP_005544707.1	hypothetical protein	-
LIN95_RS07565	-	1483702..1484475 (+)	774	WP_005568756.1	FNR family transcription factor	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54834.36 Da
• Isoelectric Point: 5.1197

>NTDB_id=537738 LIN95_RS07530 WP_005568939.1 1478467..1479891(+) (sbcB) [Aggregatibacter actinomycetemcomitans strain 5S]
MAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDEDFNIIGEPIVLYCKQTNDYLPAPEAVLVTGITPQECNEKGLSEPE
FAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPS
FRLEKLTEANGIAHDSAHDAMSDVYATIEMAKLIKRKQPKLFQYFFENRGKKEVEKLIDTAEMMPLVHVSGMLGNYRGNT
TLIAPLAWHPTNKNAVIVCDLTADIDDLLTKSVGELRENLYTKKETLLAAGALPVPLKLIHINKCPIVAPAKTLLPQNAE
RLGIDQELCAQNRQRLQEAKDIRQKVMDIFHQEREFDASDNVETELYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDP
RIPELLFHYRARHFYRTLNRAEQIKWQKYCRKKLDAEALQFEQRLQELAEQYSNNEENLMLLQKVYEYGTKIIG

Nucleotide

• Length: 1425 bp

>NTDB_id=537738 LIN95_RS07530 WP_005568939.1 1478467..1479891(+) (sbcB) [Aggregatibacter actinomycetemcomitans strain 5S]
ATGGCAAAAAACGACTTTAGTTTTTTTATTTATGATTATGAAAGTTTTGGGGTCAATCCCGCAACGGATCGCCCGGCACA
ATTCGGTGGCATTCGCACTGACGAGGATTTTAATATTATCGGTGAGCCGATTGTTCTTTATTGCAAGCAAACTAACGATT
ATTTGCCTGCACCAGAAGCGGTTTTAGTCACCGGAATTACACCACAGGAATGCAACGAAAAAGGGCTGTCGGAACCCGAA
TTTGCCGCCAAAATTTTACAGGAATTCAGCCGTCCGAATACTTGCGTGATGGGCTTTAATAACATTCGTTATGACGATGA
AATGACCCGTTATACGTTTTACCGTAATTTTATCGATCCTTATGAATACAGCTGGAAAAACGGCAATTCCCGTTGGGATT
TACTGGATTTGGTGCGTGCTTGCTATGCGTTGCGCCCGGACGGTATTGAATGGCCTTTAGATGATGAAGGTATGCCGAGT
TTCCGCCTGGAAAAACTGACAGAGGCCAATGGAATAGCGCACGATAGTGCGCATGATGCCATGTCAGATGTGTATGCCAC
TATTGAAATGGCAAAGCTCATCAAGCGGAAACAGCCTAAATTATTCCAATATTTCTTTGAAAATCGGGGTAAAAAGGAGG
TTGAAAAGCTCATCGATACCGCAGAAATGATGCCATTGGTACATGTGTCGGGAATGTTGGGGAATTATCGCGGAAATACC
ACGTTAATTGCACCTTTAGCCTGGCATCCGACGAATAAAAATGCCGTTATTGTCTGTGATTTAACTGCCGATATTGATGA
TTTATTAACAAAATCGGTAGGGGAGTTGCGTGAAAATCTTTACACCAAAAAAGAGACCTTATTGGCTGCCGGTGCATTGC
CTGTGCCATTGAAGCTCATTCATATCAATAAATGTCCGATTGTTGCGCCGGCTAAAACTTTGTTGCCACAAAACGCCGAA
CGTTTAGGTATTGATCAGGAGTTATGTGCGCAAAACCGACAACGTTTGCAGGAAGCAAAAGATATTCGCCAAAAAGTAAT
GGATATTTTTCATCAGGAACGTGAATTTGACGCTTCCGATAATGTTGAAACCGAACTGTATAACGGCTTTTTTAGTGACG
CCGATAAAAACAATATGGCGATTTTACGCAGTTTGGAACCCGAAAAATTGGCTAAACATAATCTTAGTTTTCAAGATCCA
CGAATTCCTGAATTGCTGTTCCATTATCGTGCCAGACATTTCTATCGTACATTGAACCGTGCGGAACAAATTAAATGGCA
AAAATACTGCCGTAAAAAATTAGATGCCGAGGCTTTGCAATTTGAACAACGTCTTCAAGAATTAGCCGAACAATATTCCA
ACAATGAAGAAAATCTTATGTTATTGCAAAAGGTCTATGAATATGGAACGAAAATAATCGGTTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (209-470)

• Exonuclease (RNase_T) (10-189)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	53.863	98.312	0.53