Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6K21_RS18340 Genome accession   NZ_CP069980
Coordinates   3926920..3927549 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain FDAARGOS_1291     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3921920..3932549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K21_RS18320 (I6K21_18330) ycbZ 3922322..3924082 (-) 1761 WP_000156482.1 Lon protease family protein -
  I6K21_RS18325 (I6K21_18335) matP 3924268..3924720 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  I6K21_RS18330 (I6K21_18340) ompA 3924796..3925836 (-) 1041 WP_001309394.1 porin OmpA -
  I6K21_RS18335 (I6K21_18345) sulA 3926192..3926701 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  I6K21_RS18340 (I6K21_18350) sxy/tfoX 3926920..3927549 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6K21_RS18345 (I6K21_18355) yccS 3927512..3929674 (-) 2163 WP_000875041.1 YccS family putative transporter -
  I6K21_RS18350 (I6K21_18360) yccF 3929684..3930130 (-) 447 WP_001261235.1 YccF domain-containing protein -
  I6K21_RS18355 (I6K21_18365) helD 3930253..3932307 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=537733 I6K21_RS18340 WP_000839153.1 3926920..3927549(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1291]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=537733 I6K21_RS18340 WP_000839153.1 3926920..3927549(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1291]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1