Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HMPREF9320_RS01550 Genome accession   NZ_AENS01000008
Coordinates   33629..34402 (-) Length   257 a.a.
NCBI ID   WP_007891839.1    Uniprot ID   G5KAG2
Organism   Streptococcus pseudoporcinus SPIN 20026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28629..39402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9320_RS01530 (HMPREF9320_0040) - 29695..30312 (+) 618 WP_007891751.1 hypothetical protein -
  HMPREF9320_RS01535 (HMPREF9320_0041) - 30433..31524 (+) 1092 WP_007891648.1 CHAP domain-containing protein -
  HMPREF9320_RS01540 (HMPREF9320_0043) - 32226..32471 (-) 246 WP_007891757.1 phosphopantetheine-binding protein -
  HMPREF9320_RS01545 (HMPREF9320_0044) plsX 32464..33471 (-) 1008 WP_007892005.1 phosphate acyltransferase PlsX -
  HMPREF9320_RS01550 (HMPREF9320_0045) recO 33629..34402 (-) 774 WP_007891839.1 DNA repair protein RecO Machinery gene
  HMPREF9320_RS01555 (HMPREF9320_0046) - 34392..35570 (-) 1179 WP_007891829.1 pyridoxal phosphate-dependent aminotransferase -
  HMPREF9320_RS01560 (HMPREF9320_0047) - 36155..37114 (-) 960 WP_007891999.1 ribose-phosphate diphosphokinase -
  HMPREF9320_RS01565 (HMPREF9320_0048) pcsB 37225..38460 (-) 1236 WP_007891841.1 peptidoglycan hydrolase PcsB -
  HMPREF9320_RS01570 (HMPREF9320_0049) mreD 38554..39060 (-) 507 WP_007891649.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30368.82 Da        Isoelectric Point: 6.0397

>NTDB_id=53771 HMPREF9320_RS01550 WP_007891839.1 33629..34402(-) (recO) [Streptococcus pseudoporcinus SPIN 20026]
MKTKESYALVLYNKNYREDDKLVKLFTETAGKRMFFIKHASKSKLASVIQPLTIADFMLKINEKGLSYIDDYNDVQTYPR
INQDLYRLAYATYVMSLVDAAIPDNEPDSQLFAFARKTLDLMEEGLDYEILTNIFEIQILERFGVRLNFHECVFCHRVGL
PFDFSHKYSGPLCPNHLYEDTHRSHLDPNVLYLLDQFQNVQFSELKNISLKKDMKKKLRYFIDDLYEDYVGIHLKSKKFI
DDLDKWGHIMESEQELP

Nucleotide


Download         Length: 774 bp        

>NTDB_id=53771 HMPREF9320_RS01550 WP_007891839.1 33629..34402(-) (recO) [Streptococcus pseudoporcinus SPIN 20026]
ATGAAAACTAAAGAAAGTTACGCACTGGTTCTTTATAATAAAAATTATCGGGAAGATGATAAGCTCGTCAAGTTGTTTAC
AGAAACAGCTGGTAAGCGAATGTTTTTTATTAAACACGCTAGCAAGTCAAAACTGGCATCTGTTATCCAACCCCTGACAA
TTGCTGATTTCATGTTGAAAATCAATGAAAAGGGCCTTTCTTATATAGATGATTATAACGATGTTCAAACCTATCCTAGG
ATAAATCAGGATTTATACCGCTTGGCTTATGCTACTTATGTTATGTCCCTAGTAGATGCGGCAATACCAGATAATGAACC
TGATAGTCAGCTTTTTGCTTTTGCTAGAAAAACCTTAGATTTAATGGAAGAAGGTTTGGATTATGAAATATTGACTAATA
TTTTTGAAATTCAAATTTTAGAACGTTTTGGCGTTAGATTGAATTTTCATGAATGTGTTTTTTGTCATCGTGTTGGATTA
CCTTTTGATTTTTCTCATAAATATTCAGGACCTTTGTGCCCTAACCATTTATATGAAGATACTCATCGCAGTCATCTTGA
TCCAAATGTGCTTTATTTATTAGATCAATTTCAAAATGTTCAATTTTCTGAATTAAAGAATATCTCCTTGAAAAAAGATA
TGAAAAAGAAGCTTCGTTATTTTATTGATGACCTTTATGAAGATTATGTGGGTATTCATCTCAAAAGTAAGAAATTTATT
GATGATTTGGATAAATGGGGTCATATTATGGAATCAGAGCAGGAGCTGCCTTGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KAG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.745

99.222

0.623

Multiple sequence alignment