Detailed information NTG0537688

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LIN99_RS07530
• Genome accession: NZ_CP085093
• Coordinates: 1478369..1479796 (+)
• Length: 475 a.a.
• NCBI ID: WP_032997666.1
• Uniprot ID: -
• Organism: Aggregatibacter actinomycetemcomitans strain 23S
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1473369..1484796

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIN99_RS07525	-	1477486..1478340 (+)	855	WP_005568937.1	DMT family transporter	-
LIN99_RS07530	sbcB	1478369..1479796 (+)	1428	WP_032997666.1	exodeoxyribonuclease I	Machinery gene
LIN99_RS07535	-	1479878..1480217 (+)	340	Protein_1461	helix-turn-helix domain-containing protein	-
LIN99_RS07540	-	1480464..1480769 (+)	306	WP_005566786.1	DUF2523 family protein	-
LIN99_RS07545	-	1480777..1481447 (+)	671	Protein_1463	zonular occludens toxin domain-containing protein	-
LIN99_RS07550	-	1481919..1482185 (+)	267	WP_005562612.1	hypothetical protein	-
LIN99_RS07555	-	1482182..1482430 (-)	249	WP_005573519.1	hypothetical protein	-
LIN99_RS07560	-	1482509..1482721 (-)	213	WP_231097947.1	hypothetical protein	-
LIN99_RS07565	-	1482854..1483999 (+)	1146	WP_109091931.1	phage/plasmid replication protein	-
LIN99_RS07570	-	1484020..1484349 (+)	330	WP_005562620.1	DNA-binding protein	-

Sequence

Protein

• Length: 475 a.a.
• Molecular weight: 54965.55 Da
• Isoelectric Point: 5.1197

>NTDB_id=537688 LIN99_RS07530 WP_032997666.1 1478369..1479796(+) (sbcB) [Aggregatibacter actinomycetemcomitans strain 23S]
MMAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDEDFNIIGEPIVLYCKQTNDYLPAPEAVLVTGITPQECNEKGLSEP
EFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMP
SFRLEKLTEANGIAHDSAHDAMSDVYATIEMAKLIKRKQPKLFQYFFENRGKKEVEKLIDTAEMMPLVHVSGMLGNYRGN
TTLIAPLAWHPTNKNAVIVCDLTADIDDLLTKSVGELRENLYTKKETLLAAGALPVPLKLIHINKCPIVAPAKTLLPQNA
ERLGIDQELCAQNRQRLQEAKDIRQKVMDIFHQEREFDASDNVETELYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQD
PRIPELLFHYRARHFYRTLNRAEQIKWQKYCRKKLDAEALQFEQRLQELAEQYSNNEENLMLLQKVYEYGTKIIG

Nucleotide

• Length: 1428 bp

>NTDB_id=537688 LIN99_RS07530 WP_032997666.1 1478369..1479796(+) (sbcB) [Aggregatibacter actinomycetemcomitans strain 23S]
ATGATGGCAAAAAACGACTTTAGTTTTTTTATTTATGATTATGAAAGTTTTGGGGTCAATCCCGCAACGGATCGCCCGGC
ACAATTCGGTGGCATTCGCACTGACGAGGATTTTAATATTATCGGTGAGCCGATTGTTCTTTATTGCAAGCAAACTAACG
ATTATTTGCCTGCACCAGAAGCGGTTTTAGTCACCGGAATTACACCACAGGAATGCAACGAAAAAGGGCTGTCGGAACCC
GAATTTGCCGCCAAAATTTTACAGGAATTCAGCCGTCCGAATACTTGCGTGATGGGCTTTAATAACATTCGTTATGACGA
TGAAATGACCCGTTATACGTTTTACCGTAATTTTATCGATCCTTATGAATACAGCTGGAAAAACGGCAATTCCCGTTGGG
ATTTACTGGATTTGGTGCGTGCTTGCTATGCGTTGCGCCCGGACGGTATTGAATGGCCTTTAGATGATGAAGGTATGCCG
AGTTTCCGCCTGGAAAAACTGACAGAGGCCAATGGAATAGCGCACGATAGTGCGCATGATGCCATGTCAGATGTGTATGC
CACTATTGAAATGGCAAAGCTCATCAAGCGGAAACAGCCTAAATTATTCCAATATTTCTTTGAAAATCGGGGTAAAAAGG
AGGTTGAAAAGCTCATCGATACCGCAGAAATGATGCCATTGGTACATGTGTCGGGAATGTTGGGGAATTATCGCGGAAAT
ACCACGTTAATTGCACCTTTAGCCTGGCATCCGACGAATAAAAATGCCGTTATTGTCTGTGATTTAACTGCCGATATTGA
TGATTTATTAACAAAATCGGTAGGGGAGTTGCGTGAAAATCTTTACACCAAAAAAGAGACCTTATTGGCTGCCGGTGCAT
TGCCTGTGCCATTGAAGCTCATTCATATCAATAAATGTCCGATTGTTGCGCCGGCTAAAACTTTGTTGCCACAAAACGCC
GAACGTTTAGGTATTGATCAGGAGTTATGTGCGCAAAACCGACAACGTTTGCAGGAAGCAAAAGATATTCGCCAAAAAGT
AATGGATATTTTTCATCAGGAACGTGAATTTGACGCTTCCGATAATGTTGAAACCGAACTGTATAACGGCTTTTTTAGTG
ACGCCGATAAAAACAATATGGCGATTTTACGCAGTTTGGAACCCGAAAAATTGGCTAAACATAATCTTAGTTTTCAAGAT
CCACGAATTCCTGAATTGCTGTTCCATTATCGTGCCAGACATTTCTATCGTACATTGAACCGTGCGGAACAAATTAAATG
GCAAAAATACTGCCGTAAAAAATTAGATGCCGAGGCTTTGCAATTTGAACAACGTCTTCAAGAATTAGCCGAACAATATT
CCAACAATGAAGAAAATCTTATGTTATTGCAAAAGGTCTATGAATATGGAACGAAAATAATCGGTTAA

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (ExoI_SH3) (210-471)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	53.277	99.579	0.531