Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   LIN94_RS09785 Genome accession   NZ_CP085092
Coordinates   2001167..2001865 (-) Length   232 a.a.
NCBI ID   WP_038573332.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 30R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1996167..2006865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN94_RS09765 - 1996642..1997079 (+) 438 WP_025298520.1 DNA polymerase III subunit psi -
  LIN94_RS09770 rimI 1997089..1997532 (+) 444 WP_025298521.1 ribosomal protein S18-alanine N-acetyltransferase -
  LIN94_RS09775 recC 1997534..2000950 (-) 3417 WP_038573224.1 exodeoxyribonuclease V subunit gamma -
  LIN94_RS09780 comQ 2000962..2001201 (-) 240 WP_025298523.1 DUF5374 domain-containing protein Machinery gene
  LIN94_RS09785 comO 2001167..2001865 (-) 699 WP_038573332.1 type II secretion system protein J Machinery gene
  LIN94_RS09790 comN 2001852..2002373 (-) 522 WP_005573910.1 type II secretion system protein Machinery gene
  LIN94_RS09810 pal 2003078..2003545 (-) 468 WP_025298525.1 peptidoglycan-associated lipoprotein Pal -
  LIN94_RS09815 tolB 2003560..2004840 (-) 1281 WP_005567685.1 Tol-Pal system beta propeller repeat protein TolB -
  LIN94_RS09820 tolA 2004875..2006083 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -
  LIN94_RS09825 tolR 2006100..2006522 (-) 423 WP_249852887.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26904.73 Da        Isoelectric Point: 8.9149

>NTDB_id=537644 LIN94_RS09785 WP_038573332.1 2001167..2001865(-) (comO) [Aggregatibacter actinomycetemcomitans strain 30R]
MMKNRAFFHVPPYHGQSLVALMISVALSSSLFLVIMQFYSQHQQQNREMLLRLQLQMELQRVIQLMGKDLARSGFRAVNN
KLKQNNIALFEQENTPSAVTIAQVNGEKNNSCVLFFYDLDANGCIGGNYKGDACVVNGRNNTREIERELFGYRLNQNMLE
TRLTYKSAVKQNCTQEECRRYTQQSACHYGGWADLLDEKEYEISQLSFDWLSEQKGIKIRLSGRFKRHKQIE

Nucleotide


Download         Length: 699 bp        

>NTDB_id=537644 LIN94_RS09785 WP_038573332.1 2001167..2001865(-) (comO) [Aggregatibacter actinomycetemcomitans strain 30R]
ATGATGAAGAATAGAGCGTTTTTCCACGTGCCGCCTTATCACGGGCAAAGCCTTGTTGCGCTGATGATTTCCGTGGCGCT
TTCGAGCTCTTTATTTCTCGTCATCATGCAGTTTTATAGCCAACATCAGCAACAAAATCGGGAAATGTTACTGCGTTTGC
AGTTACAAATGGAATTACAACGCGTCATTCAATTAATGGGGAAAGATTTGGCAAGAAGCGGTTTTCGTGCCGTGAATAAT
AAATTAAAACAAAATAATATCGCCTTATTTGAGCAAGAAAATACACCATCGGCAGTGACCATCGCGCAAGTGAATGGCGA
GAAAAATAACAGCTGCGTGTTGTTCTTTTATGACTTGGATGCCAATGGGTGTATCGGCGGAAATTATAAAGGCGATGCTT
GTGTTGTGAACGGGCGTAACAATACAAGAGAAATTGAGCGCGAATTGTTCGGCTATCGACTTAACCAAAACATGCTGGAA
ACTCGTTTGACCTACAAAAGTGCGGTGAAGCAAAACTGCACACAAGAAGAATGCCGCCGTTATACGCAACAATCCGCGTG
CCATTACGGTGGTTGGGCAGATTTACTGGACGAGAAAGAATATGAAATTTCGCAGTTGAGTTTTGATTGGCTGTCGGAAC
AAAAGGGGATTAAAATTCGCCTCAGTGGACGTTTTAAACGACATAAACAGATCGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

52.041

84.483

0.44