Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LIN94_RS07290 Genome accession   NZ_CP085092
Coordinates   1457339..1458763 (+) Length   474 a.a.
NCBI ID   WP_005568939.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 30R     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1452339..1463763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN94_RS07285 - 1456453..1457307 (+) 855 WP_005568937.1 DMT family transporter -
  LIN94_RS07290 sbcB 1457339..1458763 (+) 1425 WP_005568939.1 exodeoxyribonuclease I Machinery gene
  LIN94_RS07295 - 1458845..1459184 (+) 340 Protein_1412 helix-turn-helix domain-containing protein -
  LIN94_RS07300 - 1459199..1459987 (+) 789 WP_249852933.1 IS3 family transposase -
  LIN94_RS07305 - 1460115..1460360 (+) 246 WP_005562624.1 hypothetical protein -
  LIN94_RS07310 - 1460413..1460631 (+) 219 Protein_1415 type II secretion system protein GspD -
  LIN94_RS07315 - 1461239..1461490 (+) 252 Protein_1416 type II secretion system protein GspD -
  LIN94_RS07320 ftnA 1462164..1462649 (+) 486 WP_005544704.1 non-heme ferritin -
  LIN94_RS07325 ftnA 1462665..1463162 (+) 498 WP_005544705.1 non-heme ferritin -
  LIN94_RS07330 - 1463224..1463394 (-) 171 WP_005544707.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54834.36 Da        Isoelectric Point: 5.1197

>NTDB_id=537634 LIN94_RS07290 WP_005568939.1 1457339..1458763(+) (sbcB) [Aggregatibacter actinomycetemcomitans strain 30R]
MAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDEDFNIIGEPIVLYCKQTNDYLPAPEAVLVTGITPQECNEKGLSEPE
FAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPS
FRLEKLTEANGIAHDSAHDAMSDVYATIEMAKLIKRKQPKLFQYFFENRGKKEVEKLIDTAEMMPLVHVSGMLGNYRGNT
TLIAPLAWHPTNKNAVIVCDLTADIDDLLTKSVGELRENLYTKKETLLAAGALPVPLKLIHINKCPIVAPAKTLLPQNAE
RLGIDQELCAQNRQRLQEAKDIRQKVMDIFHQEREFDASDNVETELYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDP
RIPELLFHYRARHFYRTLNRAEQIKWQKYCRKKLDAEALQFEQRLQELAEQYSNNEENLMLLQKVYEYGTKIIG

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=537634 LIN94_RS07290 WP_005568939.1 1457339..1458763(+) (sbcB) [Aggregatibacter actinomycetemcomitans strain 30R]
ATGGCAAAAAACGACTTTAGTTTTTTTATTTATGATTATGAAAGTTTTGGGGTCAATCCCGCAACGGATCGCCCGGCACA
ATTCGGTGGCATTCGCACTGACGAGGATTTTAATATTATCGGTGAGCCGATTGTTCTTTATTGCAAGCAAACTAACGATT
ATTTGCCTGCACCAGAAGCGGTTTTAGTCACCGGAATTACACCACAGGAATGCAACGAAAAAGGGCTGTCGGAACCCGAA
TTTGCCGCCAAAATTTTACAGGAATTCAGCCGTCCGAATACTTGCGTGATGGGCTTTAATAACATTCGTTATGACGATGA
AATGACCCGTTATACGTTTTACCGTAATTTTATCGATCCTTATGAATACAGCTGGAAAAACGGCAATTCCCGTTGGGATT
TACTGGATTTGGTGCGTGCTTGCTATGCGTTGCGCCCGGACGGTATTGAATGGCCTTTAGATGATGAAGGTATGCCGAGT
TTCCGCCTGGAAAAACTGACAGAGGCCAATGGAATAGCGCACGATAGTGCGCATGATGCCATGTCAGATGTGTATGCCAC
TATTGAAATGGCAAAGCTCATCAAGCGGAAACAGCCTAAATTATTCCAATATTTCTTTGAAAATCGGGGTAAAAAGGAGG
TTGAAAAGCTCATCGATACCGCAGAAATGATGCCATTGGTACATGTGTCGGGAATGTTGGGGAATTATCGCGGAAATACC
ACGTTAATTGCACCTTTAGCCTGGCATCCGACGAATAAAAATGCCGTTATTGTCTGTGATTTAACTGCCGATATTGATGA
TTTATTAACAAAATCGGTAGGGGAGTTGCGTGAAAATCTTTACACCAAAAAAGAGACCTTATTGGCTGCCGGTGCATTGC
CTGTGCCATTGAAGCTCATTCATATCAATAAATGTCCGATTGTTGCGCCGGCTAAAACTTTGTTGCCACAAAACGCCGAA
CGTTTAGGTATTGATCAGGAGTTATGTGCGCAAAACCGACAACGTTTGCAGGAAGCAAAAGATATTCGCCAAAAAGTAAT
GGATATTTTTCATCAGGAACGTGAATTTGACGCTTCCGATAATGTTGAAACCGAACTGTATAACGGCTTTTTTAGTGACG
CCGATAAAAACAATATGGCGATTTTACGCAGTTTGGAACCCGAAAAATTGGCTAAACATAATCTTAGTTTTCAAGATCCA
CGAATTCCTGAATTGCTGTTCCATTATCGTGCCAGACATTTCTATCGTACATTGAACCGTGCGGAACAAATTAAATGGCA
AAAATACTGCCGTAAAAAATTAGATGCCGAGGCTTTGCAATTTGAACAACGTCTTCAAGAATTAGCCGAACAATATTCCA
ACAATGAAGAAAATCTTATGTTATTGCAAAAGGTCTATGAATATGGAACGAAAATAATCGGTTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(209-470)

Exonuclease (RNase_T)

(10-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

53.863

98.312

0.53