Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LIN94_RS02025 Genome accession   NZ_CP085092
Coordinates   399654..400289 (-) Length   211 a.a.
NCBI ID   WP_005548057.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 30R     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 394654..405289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN94_RS02000 - 394921..395205 (-) 285 WP_025298139.1 chaperone NapD -
  LIN94_RS02005 narQ 395481..397184 (+) 1704 WP_005548066.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  LIN94_RS02010 murB 397199..398224 (+) 1026 WP_005566996.1 UDP-N-acetylmuramate dehydrogenase -
  LIN94_RS02015 - 398240..398554 (+) 315 WP_005548062.1 DUF2322 family protein -
  LIN94_RS02020 rpoH 398739..399587 (+) 849 WP_249852911.1 RNA polymerase sigma factor RpoH -
  LIN94_RS02025 sxy/tfoX 399654..400289 (-) 636 WP_005548057.1 TfoX/Sxy family DNA transformation protein Regulator
  LIN94_RS02030 tuf 401577..402761 (-) 1185 WP_014167500.1 elongation factor Tu -
  LIN94_RS02035 fusA 402825..404927 (-) 2103 WP_005566415.1 elongation factor G -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23952.09 Da        Isoelectric Point: 10.4976

>NTDB_id=537612 LIN94_RS02025 WP_005548057.1 399654..400289(-) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain 30R]
MTTVSQRLKNEFKQLVDGEISIKNLFTGHGIFHSGIMFALHQNDSIFLRAEDELVPYLESLGAVAYSIDPNNTNKLALHR
YYQLPHSIRKNKPLFEKTVKLSIQQAKFKKVAEDLTKKERIKELANFSIKHERLLAKINIYTVSEFQKIGAIHSYVRLKK
LGVSANVELLWTLCAALKNKHASLLTEKEKSAILTKLNVLLAANGLRKVKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=537612 LIN94_RS02025 WP_005548057.1 399654..400289(-) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain 30R]
ATGACAACGGTATCTCAAAGACTCAAGAACGAATTCAAACAACTAGTAGATGGTGAAATCAGTATTAAAAATTTATTCAC
CGGACATGGTATATTTCATTCAGGAATAATGTTTGCACTTCATCAAAACGATAGCATTTTCTTGCGGGCTGAAGATGAGT
TAGTCCCTTACTTAGAAAGTTTAGGTGCTGTAGCTTATTCAATTGATCCCAATAATACGAATAAACTGGCACTCCACCGT
TACTATCAACTTCCTCATTCTATTCGTAAAAATAAGCCGTTATTTGAAAAAACCGTTAAATTGTCTATTCAACAGGCAAA
ATTTAAGAAAGTCGCTGAAGATTTGACAAAAAAAGAGCGAATTAAAGAATTGGCTAATTTTTCCATTAAGCATGAAAGAT
TGCTGGCTAAAATTAATATTTATACGGTAAGTGAATTTCAGAAGATCGGCGCAATTCACAGCTATGTTAGGTTAAAGAAA
CTGGGTGTTTCTGCCAACGTAGAATTGTTATGGACTTTATGCGCCGCATTAAAAAATAAGCATGCTTCGTTGCTTACGGA
AAAGGAAAAATCGGCAATTTTGACTAAATTAAATGTTTTACTTGCAGCAAATGGTTTGCGGAAAGTAAAGGCCTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(118-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

40.513

92.417

0.374