Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BUPH_RS01415 | Genome accession | NC_018695 |
| Coordinates | 308819..309979 (-) | Length | 386 a.a. |
| NCBI ID | WP_015001544.1 | Uniprot ID | K0DI44 |
| Organism | Paraburkholderia phenoliruptrix BR3459a | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 303819..314979
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BUPH_RS01385 (BUPH_04185) | rpoH | 303856..304791 (-) | 936 | WP_013587030.1 | RNA polymerase sigma factor RpoH | - |
| BUPH_RS01390 (BUPH_04186) | - | 305155..305718 (+) | 564 | WP_015001539.1 | acyloxyacyl hydrolase | - |
| BUPH_RS01395 (BUPH_04187) | - | 305759..306142 (+) | 384 | WP_015001540.1 | nuclear transport factor 2 family protein | - |
| BUPH_RS01400 (BUPH_04188) | ybiB | 306145..307116 (-) | 972 | WP_015001541.1 | DNA-binding protein YbiB | - |
| BUPH_RS01405 (BUPH_04189) | - | 307344..308042 (+) | 699 | WP_015001542.1 | fumarylacetoacetate hydrolase family protein | - |
| BUPH_RS01410 (BUPH_04190) | maiA | 308068..308712 (+) | 645 | WP_015001543.1 | maleylacetoacetate isomerase | - |
| BUPH_RS01415 (BUPH_04191) | pilA | 308819..309979 (-) | 1161 | WP_015001544.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| BUPH_RS01420 (BUPH_04192) | rsmD | 310234..310848 (+) | 615 | WP_041744889.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| BUPH_RS01425 (BUPH_04193) | coaD | 310961..311476 (+) | 516 | WP_013337946.1 | pantetheine-phosphate adenylyltransferase | - |
| BUPH_RS01430 (BUPH_04194) | - | 311540..311797 (+) | 258 | WP_013337947.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| BUPH_RS01435 (BUPH_04195) | hisC | 311872..312951 (-) | 1080 | WP_041745958.1 | histidinol-phosphate transaminase | - |
| BUPH_RS01440 (BUPH_04196) | pth | 313024..313626 (-) | 603 | WP_015001548.1 | aminoacyl-tRNA hydrolase | - |
| BUPH_RS01445 (BUPH_04197) | - | 313776..314393 (-) | 618 | WP_013587039.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
Sequence
Protein
Download Length: 386 a.a. Molecular weight: 41211.07 Da Isoelectric Point: 4.6308
>NTDB_id=53761 BUPH_RS01415 WP_015001544.1 308819..309979(-) (pilA) [Paraburkholderia phenoliruptrix BR3459a]
MFSFFKRFKGSKESENAPDESPTAADEFVDESTAVETPAAPPAEVAPQAAPSLAPQFAPEAEPETDFEESSLETVEIVPP
PVQDASAKRSWLTRLKTGLSKTSSSLTGIFVGTKIDEDLYEELETALLMSDAGVDATEFLLEALREKVRAERLTEPQQVK
AALRALLVDLLKPLEKSLMLGRAKPLVVMIAGVNGAGKTTSIGKLAKHLQSFNQSVLLAAGDTFRAAAREQLAIWGQRNN
VTVVAQESGDPAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNALT
QVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDALLGA
MFSFFKRFKGSKESENAPDESPTAADEFVDESTAVETPAAPPAEVAPQAAPSLAPQFAPEAEPETDFEESSLETVEIVPP
PVQDASAKRSWLTRLKTGLSKTSSSLTGIFVGTKIDEDLYEELETALLMSDAGVDATEFLLEALREKVRAERLTEPQQVK
AALRALLVDLLKPLEKSLMLGRAKPLVVMIAGVNGAGKTTSIGKLAKHLQSFNQSVLLAAGDTFRAAAREQLAIWGQRNN
VTVVAQESGDPAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNALT
QVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDALLGA
Nucleotide
Download Length: 1161 bp
>NTDB_id=53761 BUPH_RS01415 WP_015001544.1 308819..309979(-) (pilA) [Paraburkholderia phenoliruptrix BR3459a]
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGAAAACGCGCCAGACGAGTCGCCAACCGCTGCAGATGA
GTTCGTCGACGAGTCCACGGCGGTAGAAACGCCGGCCGCACCGCCCGCCGAAGTTGCGCCGCAGGCTGCGCCGTCGCTCG
CCCCGCAATTCGCGCCAGAAGCCGAGCCCGAGACGGATTTCGAAGAGTCGTCGCTCGAGACCGTGGAAATCGTGCCGCCG
CCGGTGCAGGACGCGAGCGCGAAACGCTCGTGGCTGACTCGTCTGAAGACGGGCTTGTCGAAGACCAGTTCCAGCCTCAC
CGGCATTTTTGTCGGCACGAAGATCGACGAGGATTTGTACGAAGAGCTGGAAACCGCGCTGCTCATGTCCGACGCGGGCG
TCGACGCCACCGAATTCCTTCTTGAGGCTTTGCGCGAGAAAGTGCGCGCCGAGCGTCTCACGGAGCCGCAGCAGGTCAAA
GCGGCGCTGCGCGCGCTGCTGGTCGATCTGTTGAAACCGCTGGAAAAGTCGCTCATGCTCGGGCGCGCCAAGCCGCTCGT
CGTCATGATCGCGGGCGTCAACGGCGCGGGCAAGACGACCAGCATCGGCAAGCTCGCCAAGCATCTGCAGAGCTTTAACC
AGTCGGTGCTGCTGGCCGCCGGCGACACGTTCCGCGCGGCCGCGCGCGAGCAGTTGGCGATCTGGGGTCAGCGCAACAAC
GTGACGGTGGTTGCGCAGGAAAGCGGCGACCCGGCCGCCGTGATTTTCGACGCGGTCGGCGCCGCGCGGGCGCGCAAGAT
CGACGTGATGATGGCGGACACGGCCGGCCGTCTGCCCACGCAGCTGCATCTGATGGAAGAGCTGCGCAAAGTGAAGCGCG
TGATCGGCAAGGCGCAGGACGGCGCGCCGCACGAAGTGCTGCTCGTGATCGACGCCAATACGGGGCAGAACGCGCTCACG
CAGGTCAAGGCTTTCGACGACGCGCTCGGGCTTACGGGGCTGATCGTGACCAAGCTCGACGGCACGGCGAAAGGCGGCAT
TCTTGCGGCTATCGCGCGGCAAAGGCCGATTCCGGTGTACTTCATCGGCGTCGGCGAAAAGGTCGAAGATCTGCAGCCGT
TCAGCGCGGAAGAGTTTTCGGACGCGTTGCTGGGCGCCTGA
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGAAAACGCGCCAGACGAGTCGCCAACCGCTGCAGATGA
GTTCGTCGACGAGTCCACGGCGGTAGAAACGCCGGCCGCACCGCCCGCCGAAGTTGCGCCGCAGGCTGCGCCGTCGCTCG
CCCCGCAATTCGCGCCAGAAGCCGAGCCCGAGACGGATTTCGAAGAGTCGTCGCTCGAGACCGTGGAAATCGTGCCGCCG
CCGGTGCAGGACGCGAGCGCGAAACGCTCGTGGCTGACTCGTCTGAAGACGGGCTTGTCGAAGACCAGTTCCAGCCTCAC
CGGCATTTTTGTCGGCACGAAGATCGACGAGGATTTGTACGAAGAGCTGGAAACCGCGCTGCTCATGTCCGACGCGGGCG
TCGACGCCACCGAATTCCTTCTTGAGGCTTTGCGCGAGAAAGTGCGCGCCGAGCGTCTCACGGAGCCGCAGCAGGTCAAA
GCGGCGCTGCGCGCGCTGCTGGTCGATCTGTTGAAACCGCTGGAAAAGTCGCTCATGCTCGGGCGCGCCAAGCCGCTCGT
CGTCATGATCGCGGGCGTCAACGGCGCGGGCAAGACGACCAGCATCGGCAAGCTCGCCAAGCATCTGCAGAGCTTTAACC
AGTCGGTGCTGCTGGCCGCCGGCGACACGTTCCGCGCGGCCGCGCGCGAGCAGTTGGCGATCTGGGGTCAGCGCAACAAC
GTGACGGTGGTTGCGCAGGAAAGCGGCGACCCGGCCGCCGTGATTTTCGACGCGGTCGGCGCCGCGCGGGCGCGCAAGAT
CGACGTGATGATGGCGGACACGGCCGGCCGTCTGCCCACGCAGCTGCATCTGATGGAAGAGCTGCGCAAAGTGAAGCGCG
TGATCGGCAAGGCGCAGGACGGCGCGCCGCACGAAGTGCTGCTCGTGATCGACGCCAATACGGGGCAGAACGCGCTCACG
CAGGTCAAGGCTTTCGACGACGCGCTCGGGCTTACGGGGCTGATCGTGACCAAGCTCGACGGCACGGCGAAAGGCGGCAT
TCTTGCGGCTATCGCGCGGCAAAGGCCGATTCCGGTGTACTTCATCGGCGTCGGCGAAAAGGTCGAAGATCTGCAGCCGT
TCAGCGCGGAAGAGTTTTCGGACGCGTTGCTGGGCGCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
54.415 |
100 |
0.591 |