Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   LIN96_RS09740 Genome accession   NZ_CP085090
Coordinates   1991904..1992602 (-) Length   232 a.a.
NCBI ID   WP_038573332.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 31R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1986904..1997602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN96_RS09720 - 1987379..1987816 (+) 438 WP_025298520.1 DNA polymerase III subunit psi -
  LIN96_RS09725 rimI 1987826..1988269 (+) 444 WP_025298521.1 ribosomal protein S18-alanine N-acetyltransferase -
  LIN96_RS09730 recC 1988271..1991687 (-) 3417 WP_205765036.1 exodeoxyribonuclease V subunit gamma -
  LIN96_RS09735 comQ 1991699..1991938 (-) 240 WP_025298523.1 DUF5374 domain-containing protein Machinery gene
  LIN96_RS09740 comO 1991904..1992602 (-) 699 WP_038573332.1 type II secretion system protein J Machinery gene
  LIN96_RS09745 comN 1992589..1993110 (-) 522 WP_005573910.1 type II secretion system protein Machinery gene
  LIN96_RS09765 pal 1993815..1994282 (-) 468 WP_025298525.1 peptidoglycan-associated lipoprotein Pal -
  LIN96_RS09770 tolB 1994297..1995577 (-) 1281 WP_005567685.1 Tol-Pal system beta propeller repeat protein TolB -
  LIN96_RS09775 tolA 1995612..1996820 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -
  LIN96_RS09780 tolR 1996837..1997259 (-) 423 WP_005545585.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26904.73 Da        Isoelectric Point: 8.9149

>NTDB_id=537544 LIN96_RS09740 WP_038573332.1 1991904..1992602(-) (comO) [Aggregatibacter actinomycetemcomitans strain 31R]
MMKNRAFFHVPPYHGQSLVALMISVALSSSLFLVIMQFYSQHQQQNREMLLRLQLQMELQRVIQLMGKDLARSGFRAVNN
KLKQNNIALFEQENTPSAVTIAQVNGEKNNSCVLFFYDLDANGCIGGNYKGDACVVNGRNNTREIERELFGYRLNQNMLE
TRLTYKSAVKQNCTQEECRRYTQQSACHYGGWADLLDEKEYEISQLSFDWLSEQKGIKIRLSGRFKRHKQIE

Nucleotide


Download         Length: 699 bp        

>NTDB_id=537544 LIN96_RS09740 WP_038573332.1 1991904..1992602(-) (comO) [Aggregatibacter actinomycetemcomitans strain 31R]
ATGATGAAGAATAGAGCGTTTTTCCACGTGCCGCCTTATCACGGGCAAAGCCTTGTTGCGCTGATGATTTCCGTGGCGCT
TTCGAGCTCTTTATTTCTCGTCATCATGCAGTTTTATAGCCAACATCAGCAACAAAATCGGGAAATGTTACTGCGTTTGC
AGTTACAAATGGAATTACAACGCGTCATTCAATTAATGGGGAAAGATTTGGCAAGAAGCGGTTTTCGTGCCGTGAATAAT
AAATTAAAACAAAATAATATCGCCTTATTTGAGCAAGAAAATACACCATCGGCAGTGACCATCGCGCAAGTGAATGGCGA
GAAAAATAACAGCTGCGTGTTGTTCTTTTATGACTTGGATGCCAATGGGTGTATCGGCGGAAATTATAAAGGCGATGCTT
GTGTTGTGAACGGGCGTAACAATACAAGAGAAATTGAGCGCGAATTGTTCGGCTATCGACTTAACCAAAACATGCTGGAA
ACTCGTTTGACCTACAAAAGTGCGGTGAAGCAAAACTGCACACAAGAAGAATGCCGCCGTTATACGCAACAATCCGCGTG
CCATTACGGTGGTTGGGCAGATTTACTGGACGAGAAAGAATATGAAATTTCGCAGTTGAGTTTTGATTGGCTGTCGGAAC
AAAAGGGGATTAAAATTCGCCTCAGTGGACGTTTTAAACGACATAAACAGATCGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

52.041

84.483

0.44