Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LIN96_RS07230 Genome accession   NZ_CP085090
Coordinates   1447405..1448829 (+) Length   474 a.a.
NCBI ID   WP_005568939.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 31R     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1442405..1453829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN96_RS07225 - 1446519..1447373 (+) 855 WP_005568937.1 DMT family transporter -
  LIN96_RS07230 sbcB 1447405..1448829 (+) 1425 WP_005568939.1 exodeoxyribonuclease I Machinery gene
  LIN96_RS07235 - 1448878..1449250 (+) 373 Protein_1401 helix-turn-helix domain-containing protein -
  LIN96_RS07240 - 1449247..1450053 (+) 807 WP_249850204.1 IS3 family transposase -
  LIN96_RS07245 - 1450181..1450426 (+) 246 WP_005562624.1 hypothetical protein -
  LIN96_RS07250 - 1450479..1450697 (+) 219 Protein_1404 type II secretion system protein GspD -
  LIN96_RS07255 - 1451305..1451556 (+) 252 Protein_1405 type II secretion system protein GspD -
  LIN96_RS07260 ftnA 1452230..1452715 (+) 486 WP_005544704.1 non-heme ferritin -
  LIN96_RS07265 ftnA 1452731..1453228 (+) 498 WP_005544705.1 non-heme ferritin -
  LIN96_RS07270 - 1453290..1453460 (-) 171 WP_005544707.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54834.36 Da        Isoelectric Point: 5.1197

>NTDB_id=537534 LIN96_RS07230 WP_005568939.1 1447405..1448829(+) (sbcB) [Aggregatibacter actinomycetemcomitans strain 31R]
MAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDEDFNIIGEPIVLYCKQTNDYLPAPEAVLVTGITPQECNEKGLSEPE
FAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPS
FRLEKLTEANGIAHDSAHDAMSDVYATIEMAKLIKRKQPKLFQYFFENRGKKEVEKLIDTAEMMPLVHVSGMLGNYRGNT
TLIAPLAWHPTNKNAVIVCDLTADIDDLLTKSVGELRENLYTKKETLLAAGALPVPLKLIHINKCPIVAPAKTLLPQNAE
RLGIDQELCAQNRQRLQEAKDIRQKVMDIFHQEREFDASDNVETELYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDP
RIPELLFHYRARHFYRTLNRAEQIKWQKYCRKKLDAEALQFEQRLQELAEQYSNNEENLMLLQKVYEYGTKIIG

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=537534 LIN96_RS07230 WP_005568939.1 1447405..1448829(+) (sbcB) [Aggregatibacter actinomycetemcomitans strain 31R]
ATGGCAAAAAACGACTTTAGTTTTTTTATTTATGATTATGAAAGTTTTGGGGTCAATCCCGCAACGGATCGCCCGGCACA
ATTCGGTGGCATTCGCACTGACGAGGATTTTAATATTATCGGTGAGCCGATTGTTCTTTATTGCAAGCAAACTAACGATT
ATTTGCCTGCACCAGAAGCGGTTTTAGTCACCGGAATTACACCACAGGAATGCAACGAAAAAGGGCTGTCGGAACCCGAA
TTTGCCGCCAAAATTTTACAGGAATTCAGCCGTCCGAATACTTGCGTGATGGGCTTTAATAACATTCGTTATGACGATGA
AATGACCCGTTATACGTTTTACCGTAATTTTATCGATCCTTATGAATACAGCTGGAAAAACGGCAATTCCCGTTGGGATT
TACTGGATTTGGTGCGTGCTTGCTATGCGTTGCGCCCGGACGGTATTGAATGGCCTTTAGATGATGAAGGTATGCCGAGT
TTCCGCCTGGAAAAACTGACAGAGGCCAATGGAATAGCGCACGATAGTGCGCATGATGCCATGTCAGATGTGTATGCCAC
TATTGAAATGGCAAAGCTCATCAAGCGGAAACAGCCTAAATTATTCCAATATTTCTTTGAAAATCGGGGTAAAAAGGAGG
TTGAAAAGCTCATCGATACCGCAGAAATGATGCCATTGGTACATGTGTCGGGAATGTTGGGGAATTATCGCGGAAATACC
ACGTTAATTGCACCTTTAGCCTGGCATCCGACGAATAAAAATGCCGTTATTGTCTGTGATTTAACTGCCGATATTGATGA
TTTATTAACAAAATCGGTAGGGGAGTTGCGTGAAAATCTTTACACCAAAAAAGAGACCTTATTGGCTGCCGGTGCATTGC
CTGTGCCATTGAAGCTCATTCATATCAATAAATGTCCGATTGTTGCGCCGGCTAAAACTTTGTTGCCACAAAACGCCGAA
CGTTTAGGTATTGATCAGGAGTTATGTGCGCAAAACCGACAACGTTTGCAGGAAGCAAAAGATATTCGCCAAAAAGTAAT
GGATATTTTTCATCAGGAACGTGAATTTGACGCTTCCGATAATGTTGAAACCGAACTGTATAACGGCTTTTTTAGTGACG
CCGATAAAAACAATATGGCGATTTTACGCAGTTTGGAACCCGAAAAATTGGCTAAACATAATCTTAGTTTTCAAGATCCA
CGAATTCCTGAATTGCTGTTCCATTATCGTGCCAGACATTTCTATCGTACATTGAACCGTGCGGAACAAATTAAATGGCA
AAAATACTGCCGTAAAAAATTAGATGCCGAGGCTTTGCAATTTGAACAACGTCTTCAAGAATTAGCTGAACAATATTCCA
ACAATGAAGAAAATCTTATGTTATTGCAAAAGGTCTATGAATATGGAACGAAAATAATCGGTTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(209-470)

Exonuclease (RNase_T)

(10-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

53.863

98.312

0.53