Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6K93_RS07810 Genome accession   NZ_CP069951
Coordinates   1605686..1606081 (-) Length   131 a.a.
NCBI ID   WP_001829977.1    Uniprot ID   A0A4Q9W3V8
Organism   Staphylococcus epidermidis strain FDAARGOS_1363     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1600686..1611081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K93_RS07785 (I6K93_07790) thiE 1601426..1602064 (-) 639 WP_002505076.1 thiamine phosphate synthase -
  I6K93_RS07790 (I6K93_07795) thiM 1602070..1602858 (-) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  I6K93_RS07795 (I6K93_07800) thiD 1602851..1603672 (-) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  I6K93_RS07800 (I6K93_07805) tenA 1603665..1604354 (-) 690 WP_001829894.1 thiaminase II -
  I6K93_RS07805 (I6K93_07810) - 1604639..1605298 (-) 660 WP_204116002.1 transglycosylase family protein -
  I6K93_RS07810 (I6K93_07815) ssb 1605686..1606081 (-) 396 WP_001829977.1 single-stranded DNA-binding protein Machinery gene
  I6K93_RS07815 (I6K93_07820) - 1606272..1606712 (+) 441 WP_001829935.1 YwpF-like family protein -
  I6K93_RS07820 (I6K93_07825) fabZ 1607030..1607467 (-) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I6K93_RS07825 (I6K93_07830) murA 1607501..1608766 (-) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6K93_RS07830 (I6K93_07835) - 1608876..1609109 (-) 234 WP_002456242.1 DUF1146 family protein -
  I6K93_RS07835 (I6K93_07840) - 1609258..1609662 (-) 405 WP_001829924.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15158.08 Da        Isoelectric Point: 5.2661

>NTDB_id=537530 I6K93_RS07810 WP_001829977.1 1605686..1606081(-) (ssb) [Staphylococcus epidermidis strain FDAARGOS_1363]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=537530 I6K93_RS07810 WP_001829977.1 1605686..1606081(-) (ssb) [Staphylococcus epidermidis strain FDAARGOS_1363]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9W3V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

73.282

100

0.733
  ssb Staphylococcus aureus MW2

72.519

100

0.725