Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   LIN96_RS04840 Genome accession   NZ_CP085090
Coordinates   941850..942452 (+) Length   200 a.a.
NCBI ID   WP_005567882.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 31R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 936850..947452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN96_RS04815 fecD 937246..938229 (-) 984 WP_005590448.1 Fe(3+) dicitrate ABC transporter permease subunit FecD -
  LIN96_RS04820 fecC 938229..939218 (-) 990 WP_005567886.1 iron-dicitrate ABC transporter permease FecC -
  LIN96_RS04825 - 939218..940111 (-) 894 WP_005567885.1 Fe(3+) dicitrate ABC transporter substrate-binding protein FecB -
  LIN96_RS04830 - 940181..941251 (-) 1071 WP_249847617.1 metallophosphoesterase -
  LIN96_RS04835 - 941436..941765 (+) 330 WP_005546714.1 YbaB/EbfC family nucleoid-associated protein -
  LIN96_RS04840 recR 941850..942452 (+) 603 WP_005567882.1 recombination mediator RecR Machinery gene
  LIN96_RS04845 - 942484..944421 (+) 1938 WP_014167642.1 DNA topoisomerase III -
  LIN96_RS04850 secG 944582..944932 (+) 351 WP_005567879.1 preprotein translocase subunit SecG -
  LIN96_RS04860 - 945312..945686 (+) 375 WP_025298176.1 integrase arm-type DNA-binding domain-containing protein -
  LIN96_RS10430 - 945673..946184 (+) 512 Protein_940 hypothetical protein -
  LIN96_RS04875 - 946766..947020 (+) 255 WP_005567878.1 EexN family lipoprotein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21844.03 Da        Isoelectric Point: 5.9220

>NTDB_id=537530 LIN96_RS04840 WP_005567882.1 941850..942452(+) (recR) [Aggregatibacter actinomycetemcomitans strain 31R]
MQTSPLLENLIESLRVLPGVGPKSAQRMAYHLLQRNRSGGMRLAQGLTEAMSKIGHCEHCRTFTEEDVCNICSNPRRQNS
GLLCVVETPADILAIEQTGQFSGRYFVLMGHLSPLDGIGPCEIGLDLLQKRLQTESFNEVILATNPTVEGDATANYIAEL
CLQQNVKVSRIAHGIPVGGELEMVDGTTLTHSFLGRREIG

Nucleotide


Download         Length: 603 bp        

>NTDB_id=537530 LIN96_RS04840 WP_005567882.1 941850..942452(+) (recR) [Aggregatibacter actinomycetemcomitans strain 31R]
ATGCAAACCAGCCCCTTGTTAGAAAATCTGATCGAAAGTTTACGCGTATTGCCGGGCGTCGGTCCGAAATCCGCGCAACG
TATGGCGTATCATTTATTGCAACGCAATCGCAGCGGCGGAATGCGCTTGGCGCAAGGGCTGACGGAAGCGATGTCGAAAA
TCGGGCATTGCGAACATTGCCGCACTTTTACGGAAGAAGACGTGTGCAACATTTGCAGTAATCCACGCCGCCAAAATTCG
GGCTTGCTTTGCGTGGTGGAAACGCCGGCGGATATTCTTGCTATCGAGCAAACAGGGCAGTTTTCCGGGCGTTATTTCGT
GCTGATGGGGCATTTGTCGCCGCTGGACGGTATCGGCCCGTGCGAAATTGGCTTGGATTTGTTGCAAAAACGCCTGCAAA
CGGAATCTTTCAATGAAGTGATTTTAGCCACTAACCCGACGGTAGAAGGCGACGCCACAGCAAACTACATTGCGGAGCTT
TGCCTGCAACAAAACGTCAAAGTCAGCCGTATTGCCCACGGCATTCCGGTGGGGGGCGAATTGGAAATGGTGGACGGCAC
CACGCTGACCCATTCCTTCTTAGGTCGCCGTGAAATCGGCTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.719

99.5

0.435