Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   LIN92_RS08935 Genome accession   NZ_CP085089
Coordinates   1833969..1834667 (-) Length   232 a.a.
NCBI ID   WP_038573332.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 31S     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1828969..1839667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN92_RS08915 - 1829444..1829881 (+) 438 WP_025298520.1 DNA polymerase III subunit psi -
  LIN92_RS08920 rimI 1829891..1830334 (+) 444 WP_025298521.1 ribosomal protein S18-alanine N-acetyltransferase -
  LIN92_RS08925 recC 1830336..1833752 (-) 3417 WP_205765036.1 exodeoxyribonuclease V subunit gamma -
  LIN92_RS08930 comQ 1833764..1834003 (-) 240 WP_025298523.1 DUF5374 domain-containing protein Machinery gene
  LIN92_RS08935 comO 1833969..1834667 (-) 699 WP_038573332.1 type II secretion system protein J Machinery gene
  LIN92_RS08940 comN 1834654..1835175 (-) 522 WP_005573910.1 type II secretion system protein Machinery gene
  LIN92_RS08960 pal 1835880..1836347 (-) 468 WP_025298525.1 peptidoglycan-associated lipoprotein Pal -
  LIN92_RS08965 tolB 1836362..1837642 (-) 1281 WP_005567685.1 Tol-Pal system beta propeller repeat protein TolB -
  LIN92_RS08970 tolA 1837677..1838885 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -
  LIN92_RS08975 tolR 1838902..1839324 (-) 423 WP_005545585.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26904.73 Da        Isoelectric Point: 8.9149

>NTDB_id=537487 LIN92_RS08935 WP_038573332.1 1833969..1834667(-) (comO) [Aggregatibacter actinomycetemcomitans strain 31S]
MMKNRAFFHVPPYHGQSLVALMISVALSSSLFLVIMQFYSQHQQQNREMLLRLQLQMELQRVIQLMGKDLARSGFRAVNN
KLKQNNIALFEQENTPSAVTIAQVNGEKNNSCVLFFYDLDANGCIGGNYKGDACVVNGRNNTREIERELFGYRLNQNMLE
TRLTYKSAVKQNCTQEECRRYTQQSACHYGGWADLLDEKEYEISQLSFDWLSEQKGIKIRLSGRFKRHKQIE

Nucleotide


Download         Length: 699 bp        

>NTDB_id=537487 LIN92_RS08935 WP_038573332.1 1833969..1834667(-) (comO) [Aggregatibacter actinomycetemcomitans strain 31S]
ATGATGAAGAATAGAGCGTTTTTCCACGTGCCGCCTTATCACGGGCAAAGCCTTGTTGCGCTGATGATTTCCGTGGCGCT
TTCGAGCTCTTTATTTCTCGTCATCATGCAGTTTTATAGCCAACATCAGCAACAAAATCGGGAAATGTTACTGCGTTTGC
AGTTACAAATGGAATTACAACGCGTCATTCAATTAATGGGGAAAGATTTGGCAAGAAGCGGTTTTCGTGCCGTGAATAAT
AAATTAAAACAAAATAATATCGCCTTATTTGAGCAAGAAAATACACCATCGGCAGTGACCATCGCGCAAGTGAATGGCGA
GAAAAATAACAGCTGCGTGTTGTTCTTTTATGACTTGGATGCCAATGGGTGTATCGGCGGAAATTATAAAGGCGATGCTT
GTGTTGTGAACGGGCGTAACAATACAAGAGAAATTGAGCGCGAATTGTTCGGCTATCGACTTAACCAAAACATGCTGGAA
ACTCGTTTGACCTACAAAAGTGCGGTGAAGCAAAACTGCACACAAGAAGAATGCCGCCGTTATACGCAACAATCCGCGTG
CCATTACGGTGGTTGGGCAGATTTACTGGACGAGAAAGAATATGAAATTTCGCAGTTGAGTTTTGATTGGCTGTCGGAAC
AAAAGGGGATTAAAATTCGCCTCAGTGGACGTTTTAAACGACATAAACAGATCGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

52.041

84.483

0.44