Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SMSK321_RS08535 Genome accession   NZ_AEDT01000026
Coordinates   37201..38160 (-) Length   319 a.a.
NCBI ID   WP_000777230.1    Uniprot ID   -
Organism   Streptococcus mitis SK321     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32201..43160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMSK321_RS08515 (SMSK321_1127) scpB 32807..33376 (+) 570 WP_000105304.1 SMC-Scp complex subunit ScpB -
  SMSK321_RS08520 (SMSK321_1128) - 33363..34085 (+) 723 WP_001222222.1 pseudouridine synthase -
  SMSK321_RS0102500 yidD 34085..34327 (+) 243 WP_000821624.1 membrane protein insertion efficiency factor YidD -
  SMSK321_RS08525 (SMSK321_1130) - 34439..35410 (-) 972 WP_000858278.1 siderophore ABC transporter substrate-binding protein -
  SMSK321_RS08530 (SMSK321_1131) - 35506..36258 (-) 753 WP_000764289.1 ABC transporter ATP-binding protein -
  SMSK321_RS0102505 - 36255..37211 (-) 957 WP_001139485.1 iron chelate uptake ABC transporter family permease subunit -
  SMSK321_RS08535 (SMSK321_1132) ceuB 37201..38160 (-) 960 WP_000777230.1 ABC transporter permease Machinery gene
  SMSK321_RS08540 (SMSK321_1133) galE 38304..39302 (-) 999 WP_000167819.1 UDP-glucose 4-epimerase GalE -
  SMSK321_RS08545 (SMSK321_1134) pepA 39597..40661 (+) 1065 WP_000209173.1 glutamyl aminopeptidase -
  SMSK321_RS08550 (SMSK321_1135) - 40683..40979 (+) 297 WP_000230157.1 bacteriocin immunity protein -
  SMSK321_RS08555 (SMSK321_1136) - 41076..42707 (-) 1632 WP_000026621.1 Na/Pi cotransporter family protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35305.25 Da        Isoelectric Point: 9.9126

>NTDB_id=53747 SMSK321_RS08535 WP_000777230.1 37201..38160(-) (ceuB) [Streptococcus mitis SK321]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFAFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFVSSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILIAVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKHYGDNLSQTKLIVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLIFILLLWRGGRKDAV

Nucleotide


Download         Length: 960 bp        

>NTDB_id=53747 SMSK321_RS08535 WP_000777230.1 37201..38160(-) (ceuB) [Streptococcus mitis SK321]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTCTTTGCTTTCGACCAGCAGACCTGGCTTCTCTTTCAAGAGTCCCGTCTTCCAAGGACCATTAGCATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGACTCCTCATGCAGACTATCACTCAAAATCAGTTTGCCGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTAGGAATGGTATTGAGCCTCTTTGTCTTTCCGTCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTGTTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTGCCTCTGATTGGGATCATCTATAGCGGGATTATCGGTTCTGTGACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATTATCCTGATAGCCGTTTGGAAATTGTCCCAAACCTTCACCATCATGAATCTAGGAAAAGAAACTAGCGAAAGTTTGG
GGATTTCTTACTCTCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACAACTAGTGTCACCATGATTACCGTGGGT
GGCTTACCATTTCTCGGGGTCATCGTTCCCAATCTTGTTCGCAAGCACTATGGAGATAATCTAAGTCAGACCAAACTCAT
CGTCGCTCTGGTCGGTGCCAATCTAGTTCTGGCCTGCGATATCCTCTCTCGAGTCTTGATTCGCCCCTATGAACTGTCCG
TCAGCCTCTTGCTAGGAATCATCGGTAGCCTTATCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCCGTCTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.742

97.179

0.367

Multiple sequence alignment