Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   LIO33_RS08910 Genome accession   NZ_CP085088
Coordinates   1810186..1810635 (-) Length   149 a.a.
NCBI ID   WP_012027921.1    Uniprot ID   G9CHX9
Organism   Streptococcus suis strain Ssuis_MA1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1805186..1815635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO33_RS08890 - 1805613..1806146 (-) 534 WP_012028546.1 histidine phosphatase family protein -
  LIO33_RS08895 - 1806153..1806596 (-) 444 WP_002939955.1 dUTP diphosphatase -
  LIO33_RS08900 - 1806702..1808486 (-) 1785 WP_012028547.1 ABC transporter ATP-binding protein -
  LIO33_RS08905 - 1808487..1810193 (-) 1707 WP_012028548.1 ABC transporter ATP-binding protein -
  LIO33_RS08910 rcrR 1810186..1810635 (-) 450 WP_012027921.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  LIO33_RS08915 - 1810857..1811873 (+) 1017 WP_012027922.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  LIO33_RS08920 galU 1811918..1812817 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LIO33_RS08925 - 1812835..1813512 (-) 678 WP_012027923.1 rhomboid family intramembrane serine protease -
  LIO33_RS08930 - 1813496..1814038 (-) 543 WP_012027924.1 5-formyltetrahydrofolate cyclo-ligase -
  LIO33_RS08935 - 1814079..1815206 (-) 1128 WP_012027925.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17284.90 Da        Isoelectric Point: 8.9142

>NTDB_id=537442 LIO33_RS08910 WP_012027921.1 1810186..1810635(-) (rcrR) [Streptococcus suis strain Ssuis_MA1]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEAETFVKDIEAELKISKSVASNLVKRMEKNGFIQ
VLPSKVDKRFKQLVLTEKGQGKICHLKAFHEEMHHSLFWGIQKEDFDLVKQVGNQLKVNIQRYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=537442 LIO33_RS08910 WP_012027921.1 1810186..1810635(-) (rcrR) [Streptococcus suis strain Ssuis_MA1]
ATGGGACATACTATTGCAGATTTTCGGAACTTGCTCAATCAGATTGAACAAATTAGTGAAACCATTGCAAAAGAATACGA
TGTGGAGCACTTGGCTGGTCCACAGGGCTGGGCCTTGCGCTTCATTGCGGAACGGTCGGAAGCCGAAACCTTTGTAAAAG
ATATAGAAGCGGAATTAAAGATTTCCAAATCGGTTGCCAGCAATCTGGTCAAGAGAATGGAGAAAAATGGCTTTATCCAA
GTCCTTCCCTCTAAGGTTGACAAACGCTTCAAACAGCTGGTTTTGACAGAGAAGGGACAAGGGAAGATATGTCACCTGAA
AGCTTTTCATGAAGAAATGCACCATTCACTTTTTTGGGGCATTCAAAAAGAGGACTTTGACTTGGTTAAACAGGTGGGCA
ATCAATTAAAAGTAAATATTCAACGCTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G9CHX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416