Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6K42_RS20990 Genome accession   NZ_CP069940
Coordinates   4430459..4431055 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain FDAARGOS_1312     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4425459..4436055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K42_RS20965 (I6K42_20965) - 4425651..4427408 (-) 1758 WP_014907886.1 Lon protease family protein -
  I6K42_RS20970 (I6K42_20970) matP 4427594..4428046 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  I6K42_RS20975 (I6K42_20975) ompA 4428178..4429248 (-) 1071 WP_002898408.1 porin OmpA -
  I6K42_RS20980 (I6K42_20980) sulA 4429601..4430110 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  I6K42_RS20985 (I6K42_20985) - 4430153..4430368 (-) 216 WP_009485781.1 hypothetical protein -
  I6K42_RS20990 (I6K42_20990) sxy/tfoX 4430459..4431055 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  I6K42_RS20995 (I6K42_20995) yccS 4431069..4433204 (-) 2136 WP_002898422.1 YccS family putative transporter -
  I6K42_RS21000 (I6K42_21000) - 4433222..4433668 (-) 447 WP_014907884.1 YccF domain-containing protein -
  I6K42_RS21005 (I6K42_21005) helD 4433793..4435847 (+) 2055 WP_014907883.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=537432 I6K42_RS20990 WP_004179217.1 4430459..4431055(+) (sxy/tfoX) [Klebsiella pneumoniae strain FDAARGOS_1312]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=537432 I6K42_RS20990 WP_004179217.1 4430459..4431055(+) (sxy/tfoX) [Klebsiella pneumoniae strain FDAARGOS_1312]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51