Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIO33_RS07140 Genome accession   NZ_CP085088
Coordinates   1436534..1438195 (-) Length   553 a.a.
NCBI ID   WP_009910555.1    Uniprot ID   A0A0H3MWL5
Organism   Streptococcus suis strain Ssuis_MA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1431534..1443195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO33_RS07115 - 1432359..1433561 (+) 1203 WP_319022785.1 IS110 family transposase -
  LIO33_RS07120 - 1433848..1434123 (-) 276 WP_002936247.1 HU family DNA-binding protein -
  LIO33_RS07125 - 1434213..1434809 (-) 597 WP_012027570.1 YpmS family protein -
  LIO33_RS07130 - 1434781..1435614 (-) 834 WP_014636487.1 SGNH/GDSL hydrolase family protein -
  LIO33_RS07135 - 1435607..1436440 (-) 834 WP_012027572.1 DegV family protein -
  LIO33_RS07140 recN 1436534..1438195 (-) 1662 WP_009910555.1 DNA repair protein RecN Machinery gene
  LIO33_RS07145 - 1438198..1438623 (-) 426 WP_172005012.1 arginine repressor -
  LIO33_RS07150 - 1438616..1439437 (-) 822 WP_009910556.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  LIO33_RS07155 - 1439430..1440299 (-) 870 WP_012027575.1 polyprenyl synthetase family protein -
  LIO33_RS07160 - 1440299..1440514 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  LIO33_RS07165 xseA 1440489..1441832 (-) 1344 WP_012775291.1 exodeoxyribonuclease VII large subunit -
  LIO33_RS07170 - 1442000..1442908 (+) 909 WP_012775292.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62761.97 Da        Isoelectric Point: 4.6542

>NTDB_id=537426 LIO33_RS07140 WP_009910555.1 1436534..1438195(-) (recN) [Streptococcus suis strain Ssuis_MA1]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDITKRLSDVVDNLDFDGNRLMQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=537426 LIO33_RS07140 WP_009910555.1 1436534..1438195(-) (recN) [Streptococcus suis strain Ssuis_MA1]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAAATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAACTCATTATCCGCCGTGAAATCCTGCAAAATGGCCGTTCGGTCAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGCTAGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTGGGGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATATAACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCATGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGCGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGAGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCTG
TTGTTTTAGAAGATATTATCCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATCTCTACCAACCCAGGTGAAGACTTCAAGCCTCTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGCAAGACTT
CCATCGTCTTTGACGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCCATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGGCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACCGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MWL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.684

100

0.45