Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   LIO33_RS04870 Genome accession   NZ_CP085088
Coordinates   975154..975636 (+) Length   160 a.a.
NCBI ID   WP_012028247.1    Uniprot ID   A0A0H3MUQ1
Organism   Streptococcus suis strain Ssuis_MA1     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 970154..980636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO33_RS04845 - 971401..972711 (-) 1311 WP_012775168.1 GntP family permease -
  LIO33_RS04850 folK 972762..973250 (-) 489 WP_012027112.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LIO33_RS04855 folB 973247..973609 (-) 363 WP_012027113.1 dihydroneopterin aldolase -
  LIO33_RS04860 folP 973602..974414 (-) 813 WP_002938084.1 dihydropteroate synthase -
  LIO33_RS04865 folE 974423..974986 (-) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  LIO33_RS04870 mutX 975154..975636 (+) 483 WP_012028247.1 8-oxo-dGTP diphosphatase Machinery gene
  LIO33_RS04875 - 975684..976361 (-) 678 WP_012027115.1 DUF4956 domain-containing protein -
  LIO33_RS04880 - 976348..977091 (-) 744 WP_012027116.1 polyphosphate polymerase domain-containing protein -
  LIO33_RS04885 - 977284..977586 (+) 303 WP_002938072.1 hypothetical protein -
  LIO33_RS04890 - 977607..977873 (-) 267 WP_012775169.1 DUF2087 domain-containing protein -
  LIO33_RS04895 pheT 977928..980327 (-) 2400 WP_012027118.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18554.91 Da        Isoelectric Point: 4.4960

>NTDB_id=537409 LIO33_RS04870 WP_012028247.1 975154..975636(+) (mutX) [Streptococcus suis strain Ssuis_MA1]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREIFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=537409 LIO33_RS04870 WP_012028247.1 975154..975636(+) (mutX) [Streptococcus suis strain Ssuis_MA1]
ATGACCAAGAAACCTGTCCAACTGGCTACGATTTGCTACATTGATAATGGCAAAGAATTTCTCCTGCTCCATCGCAATAA
AAAAGAAAACGATGTCCACCAGGGGAAATGGATTGGGGTCGGTGGTAAGCTGGAACCCGGTGAAACACCGCAGGCTTGTG
CCATTCGAGAAATCTTTGAGGAAACTGGGCTTACTGTAACGAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACTGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGACAAATTGCTTGATTATAGCGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MUQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.699

95.625

0.781