Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LIO33_RS04080 Genome accession   NZ_CP085088
Coordinates   825818..826888 (+) Length   356 a.a.
NCBI ID   WP_012775101.1    Uniprot ID   A0A0H3MV97
Organism   Streptococcus suis strain Ssuis_MA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 820818..831888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO33_RS04060 - 821933..822601 (+) 669 WP_011922395.1 SatD family protein -
  LIO33_RS04065 - 822605..823345 (+) 741 WP_011922396.1 DUF3307 domain-containing protein -
  LIO33_RS04070 - 823410..823847 (+) 438 WP_011922397.1 AAA family ATPase -
  LIO33_RS04075 - 824558..825459 (+) 902 Protein_755 Abi family protein -
  LIO33_RS04080 xerS 825818..826888 (+) 1071 WP_012775101.1 tyrosine recombinase XerS Machinery gene
  LIO33_RS04085 - 826958..828466 (-) 1509 WP_011922400.1 phosphomannomutase/phosphoglucomutase -
  LIO33_RS04090 - 828542..829483 (-) 942 WP_012775102.1 sensor histidine kinase -
  LIO33_RS04095 braR 829480..830145 (-) 666 WP_012775103.1 response regulator transcription factor Regulator
  LIO33_RS04100 - 830184..830441 (-) 258 WP_011922404.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LIO33_RS04105 relB 830425..830676 (-) 252 WP_012775104.1 type II toxin-antitoxin system RelB family antitoxin -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41485.66 Da        Isoelectric Point: 9.2257

>NTDB_id=537401 LIO33_RS04080 WP_012775101.1 825818..826888(+) (xerS) [Streptococcus suis strain Ssuis_MA1]
MRRELLLEKIDQLKEIMPWFVLEYYQSKLAVPYSFTTLYEYLKEYRRFFEWLQDSDLVAVERIADIPLDVLEHLTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVDKEYQVNLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDS
VNVAGFAKPYLEAYMGIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=537401 LIO33_RS04080 WP_012775101.1 825818..826888(+) (xerS) [Streptococcus suis strain Ssuis_MA1]
ATGAGACGCGAGTTATTATTGGAAAAAATTGATCAACTAAAAGAAATTATGCCTTGGTTTGTTCTGGAATATTATCAGTC
AAAATTGGCTGTGCCTTACAGTTTTACTACCTTATATGAATACTTGAAAGAATACCGTCGTTTTTTTGAATGGTTACAGG
ATTCGGATTTGGTGGCTGTTGAACGGATTGCTGACATTCCGCTGGATGTTCTGGAACATCTGACAAAAAAAGATATGGAA
GCTTTCATTCTTTATCTGCGGGAGCGTCCCTTGCTGAACGCCAATACCACGCAGAATGGTGTGTCGCAGACCACCATTAA
CCGTACCCTCTCGGCCCTTTCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAGAATGAGCAGGGCGAGCCCTACTTCT
ACCGCAATGTCATGAAAAAGGTATCTACTAAGAAGAAGAAGGAAACCTTGGCAGCGCGGGCGGAGAACATCAAGCAAAAG
CTCTTTTTGGGCGATGAAACGATGGAGTTCTTGGACTATGTGGACAAGGAATACCAAGTCAATCTCTCTAAACGTGCCCT
CTCCTCCTTCCAGAAAAATAAGGAGCGGGATTTGGCGATTCTGGCGCTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAAG
CGGTGAATTTGGATCTTCGAGATGTAAACCTCAATATGATGATTATCGAAGTAACTCGTAAGGGTGGTAAACGGGACTCG
GTCAATGTGGCTGGGTTTGCTAAGCCCTACTTAGAAGCCTACATGGGCATCCGTCAGCAACGCTACAAGGCTGAAAAAAC
GGATACAGCCTTCTTCCTGTCCGAATACCGTGGTCTGCCTAACCGTATCGATGCTTCTTCTATTGAAAAAATGGTTGCCA
AGTACTCTGCGGACTTCAAGATACGCGTAACCCCCCACAAACTCCGTCACACATTGGCAACTCGTCTCTACGACGCCACC
AAGTCGCAAGTTCTAGTCAGTCATCAGCTGGGCCATGCCAATACCCAGGTCACCGATCTCTACACCCATATCGTCAACGA
TGAACAGAAAAATGCTCTGGATCAGTTGTGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MV97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831