Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LIO33_RS01945 Genome accession   NZ_CP085088
Coordinates   385793..386410 (-) Length   205 a.a.
NCBI ID   WP_004194173.1    Uniprot ID   A0A0H3N278
Organism   Streptococcus suis strain Ssuis_MA1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 380793..391410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO33_RS01925 - 381628..382461 (+) 834 WP_011921979.1 energy-coupling factor transporter transmembrane protein EcfT -
  LIO33_RS01930 - 382621..382824 (+) 204 WP_004195223.1 cold-shock protein -
  LIO33_RS01935 rsmG 382866..383579 (-) 714 WP_011921980.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LIO33_RS01940 pbp1a 383638..385812 (-) 2175 WP_014636231.1 penicillin-binding protein PBP1A -
  LIO33_RS01945 recU 385793..386410 (-) 618 WP_004194173.1 Holliday junction resolvase RecU Machinery gene
  LIO33_RS01950 - 386476..387015 (+) 540 WP_004194171.1 DUF1273 domain-containing protein -
  LIO33_RS01955 gpsB 387086..387421 (+) 336 WP_004194167.1 cell division regulator GpsB -
  LIO33_RS01965 - 387978..389144 (+) 1167 WP_011921983.1 class I SAM-dependent RNA methyltransferase -
  LIO33_RS01970 - 389154..390608 (+) 1455 WP_011921984.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23805.40 Da        Isoelectric Point: 9.9440

>NTDB_id=537383 LIO33_RS01945 WP_004194173.1 385793..386410(-) (recU) [Streptococcus suis strain Ssuis_MA1]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=537383 LIO33_RS01945 WP_004194173.1 385793..386410(-) (recU) [Streptococcus suis strain Ssuis_MA1]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATTGAACACATGAAACAGGTTGTTAAACAAGGTGGTATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473