Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6K32_RS03195 Genome accession   NZ_CP069935
Coordinates   671343..671972 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain FDAARGOS_1302     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 666343..676972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K32_RS03175 (I6K32_03175) ycbZ 666743..668503 (-) 1761 WP_000156501.1 Lon protease family protein -
  I6K32_RS03180 (I6K32_03180) matP 668689..669141 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  I6K32_RS03185 (I6K32_03185) ompA 669219..670259 (-) 1041 WP_001350588.1 porin OmpA -
  I6K32_RS03190 (I6K32_03190) sulA 670615..671124 (-) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  I6K32_RS03195 (I6K32_03195) sxy/tfoX 671343..671972 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6K32_RS03200 (I6K32_03200) yccS 671935..674097 (-) 2163 WP_000875041.1 YccS family putative transporter -
  I6K32_RS03205 (I6K32_03205) yccF 674107..674553 (-) 447 WP_001261236.1 YccF domain-containing protein -
  I6K32_RS03210 (I6K32_03210) helD 674676..676730 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=537366 I6K32_RS03195 WP_000839136.1 671343..671972(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1302]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=537366 I6K32_RS03195 WP_000839136.1 671343..671972(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1302]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99