Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6K64_RS18785 Genome accession   NZ_CP069911
Coordinates   3984512..3985135 (-) Length   207 a.a.
NCBI ID   WP_004100775.1    Uniprot ID   A0AAD3YQU3
Organism   Klebsiella oxytoca strain FDAARGOS_1334     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3979512..3990135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K64_RS18770 (I6K64_18770) helD 3979748..3981802 (-) 2055 WP_204723585.1 DNA helicase IV -
  I6K64_RS18775 (I6K64_18775) - 3981925..3982371 (+) 447 WP_004100782.1 YccF domain-containing protein -
  I6K64_RS18780 (I6K64_18780) yccS 3982389..3984524 (+) 2136 WP_204723586.1 YccS family putative transporter -
  I6K64_RS18785 (I6K64_18785) sxy/tfoX 3984512..3985135 (-) 624 WP_004100775.1 TfoX/Sxy family DNA transformation protein Regulator
  I6K64_RS18790 (I6K64_18790) sulA 3985597..3986106 (+) 510 WP_024273980.1 SOS-induced cell division inhibitor SulA -
  I6K64_RS18795 (I6K64_18795) ompA 3986460..3987530 (+) 1071 WP_004100770.1 porin OmpA -
  I6K64_RS18800 (I6K64_18800) matP 3987641..3988093 (-) 453 WP_004100768.1 macrodomain Ter protein MatP -
  I6K64_RS18805 (I6K64_18805) - 3988279..3990036 (+) 1758 WP_004111904.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23688.71 Da        Isoelectric Point: 10.2095

>NTDB_id=537359 I6K64_RS18785 WP_004100775.1 3984512..3985135(-) (sxy/tfoX) [Klebsiella oxytoca strain FDAARGOS_1334]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=537359 I6K64_RS18785 WP_004100775.1 3984512..3985135(-) (sxy/tfoX) [Klebsiella oxytoca strain FDAARGOS_1334]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGTCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGCGCTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCGAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGCCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493