Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6K16_RS21105 Genome accession   NZ_CP069893
Coordinates   4401038..4401667 (+) Length   209 a.a.
NCBI ID   WP_000699018.1    Uniprot ID   A0A8S7S1H1
Organism   Escherichia coli strain FDAARGOS_1286     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4396038..4406667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K16_RS21085 (I6K16_21085) ycbZ 4396439..4398199 (-) 1761 WP_000156476.1 Lon protease family protein -
  I6K16_RS21090 (I6K16_21090) matP 4398385..4398837 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  I6K16_RS21095 (I6K16_21095) ompA 4398913..4399953 (-) 1041 WP_001314606.1 porin OmpA -
  I6K16_RS21100 (I6K16_21100) sulA 4400310..4400819 (-) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  I6K16_RS21105 (I6K16_21105) sxy/tfoX 4401038..4401667 (+) 630 WP_000699018.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6K16_RS21110 (I6K16_21110) yccS 4401630..4403792 (-) 2163 WP_000875041.1 YccS family putative transporter -
  I6K16_RS21115 (I6K16_21115) yccF 4403802..4404248 (-) 447 WP_001261236.1 YccF domain-containing protein -
  I6K16_RS21120 (I6K16_21120) helD 4404371..4406425 (+) 2055 WP_001317751.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.10 Da        Isoelectric Point: 9.2180

>NTDB_id=537314 I6K16_RS21105 WP_000699018.1 4401038..4401667(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1286]
MKILSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=537314 I6K16_RS21105 WP_000699018.1 4401038..4401667(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1286]
ATGAAAATCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995