Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   LIO32_RS06095 Genome accession   NZ_CP085087
Coordinates   1209029..1209511 (+) Length   160 a.a.
NCBI ID   WP_024381385.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA2     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1204029..1214511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO32_RS06070 - 1205277..1206587 (-) 1311 WP_024394154.1 GntP family permease -
  LIO32_RS06075 folK 1206638..1207126 (-) 489 WP_023369979.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LIO32_RS06080 folB 1207123..1207485 (-) 363 WP_012027113.1 dihydroneopterin aldolase -
  LIO32_RS06085 folP 1207478..1208290 (-) 813 WP_002938084.1 dihydropteroate synthase -
  LIO32_RS06090 folE 1208299..1208862 (-) 564 WP_172046083.1 GTP cyclohydrolase I FolE -
  LIO32_RS06095 mutX 1209029..1209511 (+) 483 WP_024381385.1 8-oxo-dGTP diphosphatase Machinery gene
  LIO32_RS06100 - 1209560..1210237 (-) 678 WP_002938079.1 DUF4956 domain-containing protein -
  LIO32_RS06105 - 1210224..1210916 (-) 693 WP_226960440.1 polyphosphate polymerase domain-containing protein -
  LIO32_RS06110 - 1211160..1211462 (+) 303 WP_002938072.1 hypothetical protein -
  LIO32_RS06115 - 1211483..1211749 (-) 267 WP_012775169.1 DUF2087 domain-containing protein -
  LIO32_RS06120 pheT 1211804..1214203 (-) 2400 WP_012775584.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18540.89 Da        Isoelectric Point: 4.4960

>NTDB_id=537314 LIO32_RS06095 WP_024381385.1 1209029..1209511(+) (mutX) [Streptococcus suis strain Ssuis_MA2]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=537314 LIO32_RS06095 WP_024381385.1 1209029..1209511(+) (mutX) [Streptococcus suis strain Ssuis_MA2]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGCAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGGGTCGGTGGCAAGCTGGAACCTGGCGAAACACCACAGGCTTGCG
CTATTCGTGAAGTCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGACAAACTGCTTGATTACAGTGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775