Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6K87_RS06575 Genome accession   NZ_CP069892
Coordinates   1351126..1352544 (-) Length   472 a.a.
NCBI ID   WP_142350438.1    Uniprot ID   -
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1346126..1357544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS06550 (I6K87_06550) - 1346260..1346940 (-) 681 WP_003029447.1 rhomboid family intramembrane serine protease -
  I6K87_RS06555 (I6K87_06555) - 1346933..1347460 (-) 528 WP_049533562.1 5-formyltetrahydrofolate cyclo-ligase -
  I6K87_RS06560 (I6K87_06560) - 1347505..1348635 (-) 1131 WP_204982489.1 N-acetyldiaminopimelate deacetylase -
  I6K87_RS06565 (I6K87_06565) dapD 1348648..1349346 (-) 699 WP_003039207.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  I6K87_RS06570 (I6K87_06570) gltX 1349461..1350918 (-) 1458 WP_204982490.1 glutamate--tRNA ligase -
  I6K87_RS06575 (I6K87_06575) radA 1351126..1352544 (-) 1419 WP_142350438.1 DNA repair protein RadA Machinery gene
  I6K87_RS06580 (I6K87_06580) - 1352504..1352947 (-) 444 WP_049533558.1 dUTP diphosphatase -
  I6K87_RS06585 (I6K87_06585) - 1353041..1354075 (-) 1035 WP_204982491.1 S66 family peptidase -
  I6K87_RS06590 (I6K87_06590) - 1354407..1355608 (+) 1202 Protein_1293 IS110 family transposase -
  I6K87_RS06595 (I6K87_06595) dinB 1355874..1356941 (-) 1068 WP_204982847.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 51443.13 Da        Isoelectric Point: 5.2817

>NTDB_id=537269 I6K87_RS06575 WP_142350438.1 1351126..1352544(-) (radA) [Streptococcus anginosus strain FDAARGOS_1357]
MVCGQVVLEALGIKKEESIIAKKKATFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEVTEVKNARVSLTGEKSRPMKLAE
VTSINVNRTKTDMDEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHKGTVLYVSGEESAEQIKLRAERLGDID
SEFYLYAETNMQSIRAEIEKIKPDFLIIDSIQTILSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLA
GPRTLEHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTR
PILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDL
PTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLNIPETIEVIGVTTIGEVLEKVFG

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=537269 I6K87_RS06575 WP_142350438.1 1351126..1352544(-) (radA) [Streptococcus anginosus strain FDAARGOS_1357]
ATGGTGTGCGGACAGGTGGTTTTGGAAGCACTGGGCATTAAGAAAGAGGAATCTATCATAGCCAAGAAAAAAGCAACATT
TGTTTGTCAAAATTGTGAATATCATTCCCCCAAGTATTTAGGGCGCTGTCCTAACTGTGGGGCTTGGTCGTCCTTTGTCG
AAGAGGTCGAAGTTACGGAGGTTAAGAATGCGCGTGTTTCTCTGACAGGGGAAAAAAGTCGACCGATGAAGTTAGCGGAG
GTAACTTCTATCAATGTCAACCGTACCAAGACAGATATGGATGAATTTAATCGCGTCTTGGGCGGCGGTGTGGTGCCAGG
AAGTTTAGTTCTAATCGGAGGAGATCCCGGCATTGGGAAATCTACCCTTTTATTGCAGGTTTCGACCCAACTCTCTCACA
AGGGAACAGTATTGTATGTCAGTGGGGAAGAGTCAGCCGAGCAGATTAAGCTGCGCGCGGAACGTTTAGGCGATATTGAC
AGTGAATTTTATCTCTATGCGGAGACCAATATGCAGAGTATTCGTGCTGAGATTGAAAAAATCAAACCAGATTTTTTGAT
TATAGATTCCATTCAGACGATTCTATCGCCAGAAATTTCCAGCGTGCAAGGGTCGGTTTCGCAAGTGCGAGAAGTGACAG
CGGAGCTGATGCAGCTGGCAAAAACCAACAATATTGCCACCTTTATCGTCGGTCATATGACGAAAGAGGGCACTCTGGCT
GGACCTAGAACTTTGGAACATATGGTGGATACAGTACTTTATTTTGAGGGTGAGCGTCAACATACTTTTCGTATTTTGCG
GGCAGTCAAAAACCGCTTCGGCTCTACGAATGAAATCGGTATTTTTGAAATGCAGTCAGGTGGTCTGGTTGAAGTACTCA
ATCCTAGCCAGGTTTTCTTAGAGGAGCGTTTAGATGGAGCGACAGGCTCTTCTATCGTGGTGACTATGGAGGGGACGCGT
CCAATCCTTGCGGAAGTGCAGGCTTTGGTGACGCCGACCATGTTTGGCAATGCCAAGCGGACAACGACAGGATTGGATTT
CAATCGTGCTAGTCTGATTATGGCTGTTTTGGAAAAGCGAGCAGGGTTATTATTGCAAAATCAAGATGCCTACCTCAAGT
CAGCAGGCGGTGTCAAATTAGATGAGCCAGCTATTGACTTAGCTGTTGCCGTTGCAATTGCTTCGAGTTATAAAGATTTG
CCAACGAATCCACAAGAATGTTTTATTGGTGAAATCGGTCTGACGGGCGAAATCCGCCGTGTCAATCGCATTGAGCAGCG
TATCAATGAAGCTGCTAAGCTGGGCTTCACCAAAGTTTACGCTCCTAAAAACTCTCTGAACGGATTGAACATTCCCGAAA
CTATTGAAGTTATTGGTGTAACAACGATTGGAGAAGTATTGGAGAAGGTGTTTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(84-237)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(27-54)

Subunit ChlI of Mg-chelatase (ChlI)

(380-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

92.035

95.763

0.881
  radA Streptococcus pneumoniae D39

92.035

95.763

0.881
  radA Streptococcus pneumoniae R6

92.035

95.763

0.881
  radA Streptococcus pneumoniae TIGR4

92.035

95.763

0.881
  radA Streptococcus mitis SK321

92.035

95.763

0.881
  radA Streptococcus mitis NCTC 12261

91.814

95.763

0.879
  radA Bacillus subtilis subsp. subtilis str. 168

62.582

96.822

0.606