Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LIO31_RS09675 Genome accession   NZ_CP085086
Coordinates   1936902..1938872 (-) Length   656 a.a.
NCBI ID   WP_023371737.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1931902..1943872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO31_RS10365 - 1931953..1932420 (-) 468 WP_012027929.1 hypothetical protein -
  LIO31_RS10370 - 1932407..1932942 (-) 536 Protein_1864 hypothetical protein -
  LIO31_RS09650 - 1933050..1933790 (-) 741 WP_012775375.1 metallophosphoesterase -
  LIO31_RS09655 - 1933856..1935205 (-) 1350 WP_226960908.1 glucose-6-phosphate isomerase -
  LIO31_RS09660 - 1935287..1935829 (-) 543 WP_012775377.1 hypothetical protein -
  LIO31_RS09670 tadA 1936100..1936621 (-) 522 WP_012027934.1 tRNA adenosine(34) deaminase TadA -
  LIO31_RS09675 recP/tkt 1936902..1938872 (-) 1971 WP_023371737.1 transketolase Machinery gene
  LIO31_RS09680 ulaG 1939084..1940175 (-) 1092 WP_023371739.1 L-ascorbate 6-phosphate lactonase -
  LIO31_RS09685 - 1940285..1941973 (-) 1689 WP_024383971.1 transcription antiterminator -
  LIO31_RS09690 - 1942098..1942715 (-) 618 WP_012775380.1 hypothetical protein -
  LIO31_RS09695 - 1942800..1943516 (-) 717 WP_023371743.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 70814.77 Da        Isoelectric Point: 4.7793

>NTDB_id=537253 LIO31_RS09675 WP_023371737.1 1936902..1938872(-) (recP/tkt) [Streptococcus suis strain Ssuis_MA6]
MSNLSVNALRFLGIDAIEKSKSGHPGVVMGAAPMAYSLFTKELRINPAQPNWVNRDRFILSAGHGSMLLYGLLHLSGFED
VTMDEIKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNRDGFPIFDHYTYVICGDGDLMEG
VSAEAASYAGLQKLEKLIVLYDSNDINLDGETKDSFTEDVRARYNAYGWHTDLVTDGTDVDAIFAAIEKAKVAGKPSLIE
IKTVIGHGSPNKQGTNAVHGAPLGAEETEATRKALDWNYAPFEIPAEVYADFKANVADRGAAAYDAWVKLVEDYKVAHPE
LAAEVTAILEGRDVVEIKPEDFPVYENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDLVNPLNR
NIQFGVREFAMGTILNGMAAHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AMPNLNVFRPADARETQAAWYLSLTSKSTPSALVLTRQNLTVEEGTDFDKVAKGAYVVYEAAGFDTILLASGSEVNLAVK
AAKELEVAGTKVRVVSVPSTELFDAQDAAYKEEILPNAIRRRLAIEMGATQSWYKYVGLDGKVLGIDTFGASAPAQTVID
NYGFTVENVVKLVGEL

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=537253 LIO31_RS09675 WP_023371737.1 1936902..1938872(-) (recP/tkt) [Streptococcus suis strain Ssuis_MA6]
ATGTCAAATCTTTCAGTCAATGCGCTTCGTTTCCTTGGTATTGATGCCATCGAAAAATCAAAATCAGGTCACCCAGGTGT
CGTCATGGGTGCAGCTCCAATGGCTTACAGCCTTTTTACTAAAGAACTTCGTATCAACCCGGCTCAGCCCAACTGGGTGA
ACCGTGACCGCTTTATCTTATCAGCAGGTCATGGGTCAATGCTCCTCTACGGACTTCTTCATTTGTCAGGATTTGAAGAT
GTCACTATGGATGAAATCAAGAACTTCCGTCAATGGGGTTCAAAAACACCAGGTCACCCAGAATTTGGTCACACAGCAGG
TGTAGATGCAACAACAGGGCCTCTTGGACAGGGTATCTCAACTGCGACGGGTTTTGCGCAAGCAGAGCGTTTCCTTGCAG
CTAAGTACAACCGCGATGGTTTCCCAATCTTTGACCACTATACTTACGTAATCTGTGGTGATGGCGACTTGATGGAGGGT
GTTTCAGCAGAAGCGGCTTCTTACGCAGGTCTTCAAAAATTAGAAAAACTCATCGTTCTTTACGATTCAAATGACATCAA
CTTGGATGGCGAAACAAAAGACTCCTTCACAGAAGACGTACGTGCCCGTTACAATGCTTATGGCTGGCATACAGACCTCG
TAACAGACGGTACAGATGTAGATGCCATCTTTGCTGCTATTGAAAAGGCAAAAGTAGCTGGTAAGCCATCTCTTATCGAA
ATCAAGACTGTTATCGGTCATGGTTCGCCAAACAAACAAGGTACAAATGCCGTTCACGGTGCTCCACTTGGTGCAGAAGA
AACAGAAGCAACTCGTAAGGCGCTTGATTGGAACTATGCACCATTTGAAATTCCAGCTGAAGTCTATGCAGACTTCAAAG
CTAATGTAGCTGATCGCGGTGCAGCAGCCTACGATGCTTGGGTAAAATTAGTTGAAGACTACAAAGTAGCTCATCCAGAA
TTAGCAGCTGAAGTAACAGCTATCTTGGAAGGTCGTGATGTAGTCGAAATCAAGCCAGAAGACTTCCCGGTTTACGAAAA
TGGCTTCTCACAAGCAACTCGTAACTCATCACAAGATGCCCTCAACGCAGCGGCTAAAGTATTGCCAACTTTCTTAGGTG
GTTCAGCTGACTTGGCTCACTCAAACATGACCTATATCAAGGAAGATGGTTTGCAAGATTTAGTAAATCCACTCAACCGC
AATATCCAGTTCGGTGTGCGTGAATTTGCCATGGGTACTATCTTGAATGGTATGGCAGCCCACGGCGGACTTCGTGTCTA
TGGTGGTACCTTCTTCGTCTTCTCAGACTATGTAAAAGCAGCAGTTCGTTTGTCAGCTCTTCAAGGACTTCCTGTGACTT
ATGTCTTCACTCATGACTCAATCGCAGTCGGTGAAGATGGTCCAACTCACGAGCCGATTGAGCACTTGGCAGGACTTCGT
GCTATGCCAAACCTCAATGTCTTCCGCCCAGCAGATGCGCGTGAAACACAGGCAGCTTGGTACTTGTCATTGACTAGCAA
GTCTACACCATCAGCCCTTGTTCTCACTCGTCAAAACTTGACAGTTGAAGAAGGTACAGACTTTGACAAGGTTGCAAAAG
GGGCTTATGTTGTCTATGAAGCAGCAGGCTTTGATACAATCCTTCTTGCATCTGGTTCAGAAGTGAACTTGGCTGTTAAA
GCTGCCAAAGAACTAGAAGTAGCAGGCACTAAGGTTCGTGTGGTTTCTGTGCCATCAACTGAACTCTTCGATGCACAAGA
TGCTGCCTACAAGGAAGAAATCCTACCAAATGCCATCCGTCGTCGTCTGGCTATCGAAATGGGTGCAACTCAAAGTTGGT
ACAAGTATGTCGGTCTTGACGGTAAAGTCCTTGGTATCGACACATTCGGTGCCTCAGCTCCAGCCCAAACAGTTATTGAC
AACTATGGCTTCACAGTAGAAAATGTTGTGAAATTAGTTGGCGAATTGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(537-649)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-332)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

81.098

100

0.811