Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   LIO31_RS05955 Genome accession   NZ_CP085086
Coordinates   1172005..1172487 (+) Length   160 a.a.
NCBI ID   WP_024381385.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA6     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1167005..1177487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO31_RS05930 - 1168253..1169563 (-) 1311 WP_024394154.1 GntP family permease -
  LIO31_RS05935 folK 1169614..1170102 (-) 489 WP_023369979.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LIO31_RS05940 folB 1170099..1170461 (-) 363 WP_012027113.1 dihydroneopterin aldolase -
  LIO31_RS05945 folP 1170454..1171266 (-) 813 WP_002938084.1 dihydropteroate synthase -
  LIO31_RS05950 folE 1171275..1171838 (-) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  LIO31_RS05955 mutX 1172005..1172487 (+) 483 WP_024381385.1 8-oxo-dGTP diphosphatase Machinery gene
  LIO31_RS05960 - 1172536..1173213 (-) 678 WP_002938079.1 DUF4956 domain-containing protein -
  LIO31_RS05965 - 1173200..1173892 (-) 693 WP_226960440.1 polyphosphate polymerase domain-containing protein -
  LIO31_RS05970 - 1174136..1174438 (+) 303 WP_002938072.1 hypothetical protein -
  LIO31_RS05975 - 1174459..1174725 (-) 267 WP_012775169.1 DUF2087 domain-containing protein -
  LIO31_RS05980 pheT 1174780..1177179 (-) 2400 WP_012775584.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18540.89 Da        Isoelectric Point: 4.4960

>NTDB_id=537218 LIO31_RS05955 WP_024381385.1 1172005..1172487(+) (mutX) [Streptococcus suis strain Ssuis_MA6]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=537218 LIO31_RS05955 WP_024381385.1 1172005..1172487(+) (mutX) [Streptococcus suis strain Ssuis_MA6]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGCAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGGGTCGGTGGCAAGCTGGAACCTGGCGAAACACCACAGGCTTGCG
CTATTCGTGAAGTCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGACAAACTGCTTGATTACAGTGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775