Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LIO31_RS00205 Genome accession   NZ_CP085086
Coordinates   28574..29356 (+) Length   260 a.a.
NCBI ID   WP_074389617.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23574..34356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO31_RS00185 mreD 24422..24910 (+) 489 WP_009908846.1 rod shape-determining protein MreD -
  LIO31_RS00190 pcsB 24995..26251 (+) 1257 WP_012774880.1 peptidoglycan hydrolase PcsB -
  LIO31_RS00195 - 26354..27322 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  LIO31_RS00200 - 27409..28587 (+) 1179 WP_024405849.1 pyridoxal phosphate-dependent aminotransferase -
  LIO31_RS00205 recO 28574..29356 (+) 783 WP_074389617.1 DNA repair protein RecO Machinery gene
  LIO31_RS00210 plsX 29353..30360 (+) 1008 WP_011921644.1 phosphate acyltransferase PlsX -
  LIO31_RS00215 - 30353..30601 (+) 249 WP_011921645.1 phosphopantetheine-binding protein -
  LIO31_RS00220 purC 30719..31426 (+) 708 WP_011921646.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30482.98 Da        Isoelectric Point: 5.4231

>NTDB_id=537165 LIO31_RS00205 WP_074389617.1 28574..29356(+) (recO) [Streptococcus suis strain Ssuis_MA6]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYGDFIVKINDEGLSYIEDFHQVQPFKN
INSDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=537165 LIO31_RS00205 WP_074389617.1 28574..29356(+) (recO) [Streptococcus suis strain Ssuis_MA6]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGACGACAAGCTGGTCAAGATTTTTAC
GGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAGTCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGGGGATTTTATCGTTAAAATCAATGATGAAGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACAGTGATATTTTCAAGCTTAGCTATGCTACTTACATCTTAGCCTTGGCAGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATTAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCCATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.323

96.538

0.669