Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   LIO34_RS10010 Genome accession   NZ_CP085085
Coordinates   2016910..2017359 (-) Length   149 a.a.
NCBI ID   WP_004298348.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2011910..2022359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS09990 - 2012341..2012874 (-) 534 WP_044760304.1 histidine phosphatase family protein -
  LIO34_RS09995 - 2012881..2013324 (-) 444 WP_004298354.1 dUTP diphosphatase -
  LIO34_RS10000 - 2013426..2015210 (-) 1785 WP_004298352.1 ABC transporter ATP-binding protein -
  LIO34_RS10005 - 2015211..2016917 (-) 1707 WP_004298350.1 ABC transporter ATP-binding protein -
  LIO34_RS10010 rcrR 2016910..2017359 (-) 450 WP_004298348.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  LIO34_RS10015 - 2017581..2018597 (+) 1017 WP_004298347.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  LIO34_RS10020 galU 2018643..2019542 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LIO34_RS10025 - 2019561..2020238 (-) 678 WP_004298343.1 rhomboid family intramembrane serine protease -
  LIO34_RS10030 - 2020222..2020764 (-) 543 WP_004298341.1 5-formyltetrahydrofolate cyclo-ligase -
  LIO34_RS10035 - 2020806..2021933 (-) 1128 WP_013730633.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17631.12 Da        Isoelectric Point: 7.5575

>NTDB_id=537156 LIO34_RS10010 WP_004298348.1 2016910..2017359(-) (rcrR) [Streptococcus suis strain Ssuis_MA8]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEVETFVKDIEAELRISKSVASNLVKRMEKNDFIR
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVADQLKDNIQHYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=537156 LIO34_RS10010 WP_004298348.1 2016910..2017359(-) (rcrR) [Streptococcus suis strain Ssuis_MA8]
ATGGGACATACTATTGCAGATTTTCGGAATCTATTAAATCAGATTGAACAAATCAGTGAAACCATTGCAAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGATGGGCTCTGCGTTTCATAGCAGAACGGTCTGAAGTTGAAACCTTTGTCAAAG
ACATTGAAGCGGAGTTGAGGATTTCCAAATCCGTTGCCAGCAATCTAGTTAAGCGAATGGAGAAAAATGACTTTATTCGG
GTTTTACCTTCTCAGTTTGACAGACGCTATAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTCTTTCGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTAGCCG
ATCAATTAAAAGATAATATTCAACACTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.972

94.631

0.416