Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIO34_RS08040 Genome accession   NZ_CP085085
Coordinates   1607461..1609122 (-) Length   553 a.a.
NCBI ID   WP_009910555.1    Uniprot ID   A0A0H3MWL5
Organism   Streptococcus suis strain Ssuis_MA8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1602461..1614122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS08010 - 1602488..1602955 (-) 468 WP_009910549.1 GNAT family N-acetyltransferase -
  LIO34_RS08015 - 1603426..1604682 (+) 1257 WP_002936184.1 ISL3-like element ISSsu6 family transposase -
  LIO34_RS08020 - 1604775..1605050 (-) 276 WP_002936247.1 HU family DNA-binding protein -
  LIO34_RS08025 - 1605140..1605736 (-) 597 WP_002936249.1 YpmS family protein -
  LIO34_RS08030 - 1605708..1606541 (-) 834 WP_002936251.1 SGNH/GDSL hydrolase family protein -
  LIO34_RS08035 - 1606534..1607367 (-) 834 WP_002936253.1 DegV family protein -
  LIO34_RS08040 recN 1607461..1609122 (-) 1662 WP_009910555.1 DNA repair protein RecN Machinery gene
  LIO34_RS08045 - 1609125..1609550 (-) 426 WP_002936261.1 arginine repressor -
  LIO34_RS08050 - 1609543..1610364 (-) 822 WP_009910556.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  LIO34_RS08055 - 1610357..1611226 (-) 870 WP_009910557.1 polyprenyl synthetase family protein -
  LIO34_RS08060 - 1611226..1611441 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  LIO34_RS08065 xseA 1611416..1612759 (-) 1344 WP_013730498.1 exodeoxyribonuclease VII large subunit -
  LIO34_RS08070 - 1612928..1613836 (+) 909 WP_024409166.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62761.97 Da        Isoelectric Point: 4.6542

>NTDB_id=537140 LIO34_RS08040 WP_009910555.1 1607461..1609122(-) (recN) [Streptococcus suis strain Ssuis_MA8]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDITKRLSDVVDNLDFDGNRLMQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=537140 LIO34_RS08040 WP_009910555.1 1607461..1609122(-) (recN) [Streptococcus suis strain Ssuis_MA8]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAAATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAACTCATTATCCGCCGTGAAATCCTGCAAAATGGCCGTTCGGTCAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGCTAGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTGGGGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATATAACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCATGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGCGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGAGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCAG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATTTCTACCAACCCAGGTGAAGACTTCAAACCACTGGT
TAAGGTAGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTTATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MWL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.684

100

0.45