Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   IUB69_RS18285 Genome accession   NZ_ABACVG020000001
Coordinates   3858457..3859062 (+) Length   201 a.a.
NCBI ID   WP_270097786.1    Uniprot ID   -
Organism   Escherichia coli strain 2020CK-00188     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3853457..3864062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUB69_RS18255 (IUB69_018205) rsmS 3854162..3854323 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  IUB69_RS18260 (IUB69_018210) priC 3854337..3854864 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  IUB69_RS18265 (IUB69_018215) ybaN 3854934..3855311 (+) 378 WP_001188905.1 DUF454 family protein -
  IUB69_RS18270 (IUB69_018220) apt 3855464..3856015 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  IUB69_RS18275 (IUB69_018225) dnaX 3856144..3858075 (+) 1932 WP_032183490.1 DNA polymerase III subunit gamma/tau -
  IUB69_RS18280 (IUB69_018230) ybaB 3858128..3858457 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  IUB69_RS18285 (IUB69_018235) recR 3858457..3859062 (+) 606 WP_270097786.1 recombination mediator RecR Machinery gene
  IUB69_RS18290 (IUB69_018240) htpG 3859172..3861046 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  IUB69_RS18295 (IUB69_018245) adk 3861227..3861871 (+) 645 WP_001220233.1 adenylate kinase -
  IUB69_RS18300 (IUB69_018250) hemH 3862003..3862965 (+) 963 WP_001250117.1 ferrochelatase -
  IUB69_RS18305 (IUB69_018255) aes 3862962..3863921 (-) 960 WP_032183491.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21982.05 Da        Isoelectric Point: 4.9135

>NTDB_id=53713 IUB69_RS18285 WP_270097786.1 3858457..3859062(+) (recR) [Escherichia coli strain 2020CK-00188]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSRSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=53713 IUB69_RS18285 WP_270097786.1 3858457..3859062(+) (recR) [Escherichia coli strain 2020CK-00188]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGATGGCAC
CACGCTGTCACGCTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.729

99.005

0.453
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment