Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LIO34_RS04720 Genome accession   NZ_CP085085
Coordinates   923228..924997 (+) Length   589 a.a.
NCBI ID   WP_002938582.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 918228..929997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS04690 - 919039..919794 (+) 756 WP_013730347.1 class I SAM-dependent methyltransferase -
  LIO34_RS04695 pcp 919791..920438 (+) 648 WP_013730348.1 pyroglutamyl-peptidase I -
  LIO34_RS04700 - 920438..920746 (+) 309 WP_013730349.1 DUF4298 domain-containing protein -
  LIO34_RS04705 rpsP 920871..921143 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  LIO34_RS04710 - 921165..921407 (+) 243 WP_012028079.1 KH domain-containing protein -
  LIO34_RS04715 rcrP 921483..923219 (+) 1737 WP_013730350.1 ABC transporter ATP-binding protein Regulator
  LIO34_RS04720 rcrQ 923228..924997 (+) 1770 WP_002938582.1 ABC transporter ATP-binding protein Regulator
  LIO34_RS04725 - 925041..925964 (-) 924 WP_002938584.1 polysaccharide deacetylase family protein -
  LIO34_RS04730 - 926069..927355 (+) 1287 WP_105135166.1 homoserine dehydrogenase -
  LIO34_RS04735 thrB 927359..928219 (+) 861 WP_172005884.1 homoserine kinase -
  LIO34_RS04740 - 928488..929676 (-) 1189 Protein_882 IS110 family transposase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65875.84 Da        Isoelectric Point: 5.2701

>NTDB_id=537113 LIO34_RS04720 WP_002938582.1 923228..924997(+) (rcrQ) [Streptococcus suis strain Ssuis_MA8]
MKNRSVFTRVWDYLRRYQSSVFLAIFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVITLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTESLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=537113 LIO34_RS04720 WP_002938582.1 923228..924997(+) (rcrQ) [Streptococcus suis strain Ssuis_MA8]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACCAATCTTCTGTATTTTTAGCCATTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTAGAACCCTTTGTGCTGGGGCTTATCATTACAGAATTGACCAAGAATTTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGATTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCTGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCATAACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCTCTAGTTCACGGCTTCTCAAACAT
CGCCTACGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAATTGGCACCACAGTTGCAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCCTAGATGAGCTTGATGAAGAAGACGCCAATGCGCTGGAGTTGACAGAAAGTCTGACAGG
ACAAGTCAGCTTTGAACAGGTCGAATTTGGCTATTCAGAAGACAAGCCGCTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTTGCTATCGTTGGACCAACGGGGGCAGGTAAGACAACCCTTATCAACTTGCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCGAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGCAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCATTTTATCCGTACCCTGCCTGGTGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCTATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGCCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.559

100

0.436