Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LIO34_RS04715 Genome accession   NZ_CP085085
Coordinates   921483..923219 (+) Length   578 a.a.
NCBI ID   WP_013730350.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 916483..928219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS04690 - 919039..919794 (+) 756 WP_013730347.1 class I SAM-dependent methyltransferase -
  LIO34_RS04695 pcp 919791..920438 (+) 648 WP_013730348.1 pyroglutamyl-peptidase I -
  LIO34_RS04700 - 920438..920746 (+) 309 WP_013730349.1 DUF4298 domain-containing protein -
  LIO34_RS04705 rpsP 920871..921143 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  LIO34_RS04710 - 921165..921407 (+) 243 WP_012028079.1 KH domain-containing protein -
  LIO34_RS04715 rcrP 921483..923219 (+) 1737 WP_013730350.1 ABC transporter ATP-binding protein Regulator
  LIO34_RS04720 rcrQ 923228..924997 (+) 1770 WP_002938582.1 ABC transporter ATP-binding protein Regulator
  LIO34_RS04725 - 925041..925964 (-) 924 WP_002938584.1 polysaccharide deacetylase family protein -
  LIO34_RS04730 - 926069..927355 (+) 1287 WP_105135166.1 homoserine dehydrogenase -
  LIO34_RS04735 thrB 927359..928219 (+) 861 WP_172005884.1 homoserine kinase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65109.54 Da        Isoelectric Point: 5.9944

>NTDB_id=537112 LIO34_RS04715 WP_013730350.1 921483..923219(+) (rcrP) [Streptococcus suis strain Ssuis_MA8]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQENRFAEVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALDPLKTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQKVLDMPISISKNE
EGITKSDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=537112 LIO34_RS04715 WP_013730350.1 921483..923219(+) (rcrP) [Streptococcus suis strain Ssuis_MA8]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTATTTGTAGT
GGTAAACTTAGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAATTG
ACTACCAATATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTCTTGAAACTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATTATGACCTTGGTAACCAGTCCGAGCTTGGCTTGGACAGTAGCA
GTAGCCATGCCGTTTCTAGTTTTTGTTATTTTCTATGTGGCAACAAAAACTCGTCCTCTCTCTGAAAAACAACAGAAACG
ATTGGATACTATCAACCAGTATGTTCGTGAAAATCTCATGGGTTTGCGGGTCATTCGTGCCTTTACACGTGAAGAGTTCC
AAGAAAATCGTTTTGCAGAGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTTGCTTTGGATCCCTTGAAAACAGGCAGTCT
ACAAATCGGTGATTTAGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCTTTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGAATTCAGAAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GAAGGTATTACTAAATCAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGTGAAACGATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGATGGTGTGGATGTCAGACGC
TACAATCTGAAGGCACTCCGCAGCAAGATTGGCTTTATTCCACAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACAGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCACTTGGCTGAGGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAGCAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCTCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398