Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LIO34_RS03220 Genome accession   NZ_CP085085
Coordinates   607808..608584 (+) Length   258 a.a.
NCBI ID   WP_004194108.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA8     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 602808..613584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS03210 - 605931..606134 (-) 204 Protein_583 transposase -
  LIO34_RS03215 rlmD 606418..607770 (-) 1353 WP_004194110.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  LIO34_RS03220 recX 607808..608584 (+) 777 WP_004194108.1 recombination regulator RecX Regulator
  LIO34_RS03225 - 608660..609193 (+) 534 WP_004194106.1 DUF402 domain-containing protein -
  LIO34_RS03230 - 609251..609568 (+) 318 WP_004194104.1 DUF960 domain-containing protein -
  LIO34_RS03235 - 609668..610399 (+) 732 WP_004194101.1 GntR family transcriptional regulator -
  LIO34_RS03240 - 610539..611249 (-) 711 WP_004194099.1 GntR family transcriptional regulator -
  LIO34_RS03245 - 611456..613228 (+) 1773 WP_004194097.1 beta-galactosidase family protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30460.04 Da        Isoelectric Point: 9.2585

>NTDB_id=537102 LIO34_RS03220 WP_004194108.1 607808..608584(+) (recX) [Streptococcus suis strain Ssuis_MA8]
MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQEFRELRDFAQFSYGKNLALYYLSFKQRTKKEVSDYL
KKYEIEENNIVKIVMVLEEEKWLDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKPLIDKRLAEEDFSELAGKIGEK
LVGRYQRKLPLRALQDKVVQGLMGKGFSYETAKQSLSQLELVADEENEDDLIAKELDKQYRKYSRKYEGYELKQRLIQAL
ARKGYDFDRIQAVLRDYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=537102 LIO34_RS03220 WP_004194108.1 607808..608584(+) (recX) [Streptococcus suis strain Ssuis_MA8]
ATGAGAATTACAAAAATTGAAAAAAAGAAACGTCTTTATTTACTTGAAGTGGATGGTCAGGATAGTTTATATATTACGGA
AGACACAATTGTTCGCTTCATGCTTAGTAAGGGAAAGGAAATCACGGAGCAGGAGTTTCGTGAGCTTCGCGATTTTGCTC
AGTTTTCTTATGGGAAAAATCTAGCACTTTATTACCTTTCCTTCAAGCAACGTACCAAAAAAGAAGTTAGTGATTATCTA
AAAAAATATGAAATTGAAGAAAACAATATTGTCAAGATTGTGATGGTATTAGAAGAGGAAAAATGGCTGGACGATGGGAA
TTATGTTGATAGCTATGTCCGTCAGAATGCTCTAAATGGAGATAAGGGACCAGCTATGATTCGTCAGAAGTTGATGCAGA
AAGGAATTCCTAAACCGCTGATTGATAAAAGGCTGGCAGAGGAAGATTTTTCAGAGCTTGCTGGGAAGATTGGGGAGAAA
TTGGTGGGTAGATACCAAAGAAAATTGCCTCTTCGAGCTTTGCAAGATAAAGTTGTACAGGGATTGATGGGGAAGGGTTT
TTCTTATGAGACGGCCAAACAAAGCCTGAGTCAGTTGGAACTTGTGGCTGATGAGGAAAATGAAGATGACTTAATTGCCA
AGGAATTGGATAAGCAGTATAGAAAATATAGTCGTAAATATGAAGGCTACGAATTGAAGCAAAGGTTGATACAGGCTTTA
GCTCGAAAGGGTTATGACTTTGATCGGATTCAGGCTGTCCTTCGTGATTATCTGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.581

100

0.368