Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LIO34_RS02125 Genome accession   NZ_CP085085
Coordinates   407062..407679 (-) Length   205 a.a.
NCBI ID   WP_004194173.1    Uniprot ID   A0A0H3N278
Organism   Streptococcus suis strain Ssuis_MA8     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 402062..412679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS02105 - 402749..403582 (+) 834 WP_004194181.1 energy-coupling factor transporter transmembrane protein EcfT -
  LIO34_RS02110 - 403742..403945 (+) 204 WP_004194179.1 cold-shock protein -
  LIO34_RS02115 rsmG 404135..404848 (-) 714 WP_004194177.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LIO34_RS02120 pbp1a 404907..407081 (-) 2175 WP_004194174.1 penicillin-binding protein PBP1A -
  LIO34_RS02125 recU 407062..407679 (-) 618 WP_004194173.1 Holliday junction resolvase RecU Machinery gene
  LIO34_RS02130 - 407745..408284 (+) 540 WP_004194171.1 DUF1273 domain-containing protein -
  LIO34_RS02135 gpsB 408352..408687 (+) 336 WP_004194167.1 cell division regulator GpsB -
  LIO34_RS02145 - 409244..410410 (+) 1167 WP_004194163.1 class I SAM-dependent RNA methyltransferase -
  LIO34_RS02150 - 410420..411874 (+) 1455 WP_004194161.1 cell division site-positioning protein MapZ family protein -
  LIO34_RS02155 - 412092..412574 (-) 483 WP_004194159.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23805.40 Da        Isoelectric Point: 9.9440

>NTDB_id=537094 LIO34_RS02125 WP_004194173.1 407062..407679(-) (recU) [Streptococcus suis strain Ssuis_MA8]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=537094 LIO34_RS02125 WP_004194173.1 407062..407679(-) (recU) [Streptococcus suis strain Ssuis_MA8]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATTGAACACATGAAACAGGTTGTTAAACAAGGTGGTATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473