Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LIO34_RS01235 Genome accession   NZ_CP085085
Coordinates   223381..224094 (+) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A0H3MT72
Organism   Streptococcus suis strain Ssuis_MA8     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 218381..229094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS01225 treC 219448..221073 (-) 1626 WP_009909185.1 alpha,alpha-phosphotrehalase -
  LIO34_RS01230 treP 221154..223148 (-) 1995 WP_002935953.1 PTS system trehalose-specific EIIBC component -
  LIO34_RS01235 treR 223381..224094 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  LIO34_RS01240 - 224152..224463 (+) 312 WP_002935948.1 hypothetical protein -
  LIO34_RS01245 - 224460..225008 (+) 549 WP_002935945.1 CvpA family protein -
  LIO34_RS01250 mutS/mutS2 225559..227892 (+) 2334 WP_002935942.1 endonuclease MutS2 Machinery gene
  LIO34_RS01255 - 228058..228450 (+) 393 WP_014636774.1 DUF1310 family protein -
  LIO34_RS01260 - 228443..228706 (+) 264 WP_022540536.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=537089 LIO34_RS01235 WP_012774930.1 223381..224094(+) (treR) [Streptococcus suis strain Ssuis_MA8]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=537089 LIO34_RS01235 WP_012774930.1 223381..224094(+) (treR) [Streptococcus suis strain Ssuis_MA8]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTAACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MT72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515